View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_63 (Length: 258)
Name: NF8991_low_63
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 47391836 - 47392067
Alignment:
| Q |
18 |
ctaagaccagcagcaaacatggcaacatttctctttaacaagcacttcattggcggagaaagatcaaacctcttcgggaattcaatctccctctgcaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391836 |
ctaagaccagcagcaaacatggcaacatttctctttaacaagcacttcattggcggagaaagatcaaacctcttcgggaattcaatctccctctgcaaaa |
47391935 |
T |
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| Q |
118 |
ccggagcacaagacaatatcctattcgcattcgtgatgtaatccccatttccaaatcctcaccccctcatgatacttacaggatggaaaagacctatgag |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391936 |
ccggagcacaagacaatatcccattcgcattcgtgatgtaatccccatttccaaatcctcaccccctcatgatacttacaggatggaaaagacctatgag |
47392035 |
T |
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| Q |
218 |
caaccggtttagaacaagccttaccaacacca |
249 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
47392036 |
caaccggtttagaacaagccttaccaccacca |
47392067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 40624297 - 40624067
Alignment:
| Q |
18 |
ctaagaccagcagcaaacatggcaacatttctctttaacaagcacttcattggcggagaaagatcaaacctcttcgggaattcaatctccctctgcaaaa |
117 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624297 |
ctaaaaccagcagcaaacatggcaacatttctcttcaacaagcacttcattggcggagaaagatcaaacctcttcgggaattcaatctccctctgcaaaa |
40624198 |
T |
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| Q |
118 |
ccggagcacaagacaatatcctattcgcattcgtgatgtaatccccatttccaaatcctcaccccctcatgatacttacaggatggaaaagacctatgag |
217 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||| |
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| T |
40624197 |
ccggagcacaagacaatatcccattcgcattcgtggggtaatccccatttccaaatcccca-cccctcatgaaacttacagggtggaaaagacctatgag |
40624099 |
T |
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| Q |
218 |
caaccggtttagaacaagccttaccaacacca |
249 |
Q |
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|||||||||||| || |||||||||| ||||| |
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| T |
40624098 |
caaccggtttagtacgagccttaccaccacca |
40624067 |
T |
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