View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_64 (Length: 251)
Name: NF8991_low_64
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_64 |
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| [»] chr1 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 1463544 - 1463309
Alignment:
| Q |
15 |
atactgacttgcaggtatagagctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagcttatagtg |
114 |
Q |
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| T |
1463544 |
atactgacttgcaggtatagagctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagcttatagtg |
1463445 |
T |
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| Q |
115 |
cttagtatttctcctagttggtgatgatatttaaatgnnnnnnntataaacatatataaatttaatttaccgagaaaaagtcggaatcatgcatggccca |
214 |
Q |
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| T |
1463444 |
cttagtatttctcctagttggtgatgatatttaaatg-aaaaaatataaacatatataaatttaatttaccgagaaaaagtcagaatcatgcatggccca |
1463346 |
T |
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| Q |
215 |
gaaaaatatgactgtcattagggccatgtaactgcca |
251 |
Q |
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| T |
1463345 |
gaaaaatatgactgtcattagggccatgtaactgcca |
1463309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 1482280 - 1482197
Alignment:
| Q |
62 |
tctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagcttatagtgcttagtatttctcctagttggtgatgatatt |
145 |
Q |
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| T |
1482280 |
tctcaaagacctcataccaaacttgtccttcaacatatttaaaggtaatagtgcttagcattttttcttgttggtgatgatatt |
1482197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 1496121 - 1496213
Alignment:
| Q |
15 |
atactgacttgcaggtatagagctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagct |
107 |
Q |
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| T |
1496121 |
atactaacttgtagatataaagccgccatcatctcatcaggattatgtcttataggcctcacaccaaacttgttctgcaacatatataaagct |
1496213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 4154249 - 4154314
Alignment:
| Q |
80 |
aaacttgtcctgcaacatgtttaaagcttatagtgcttagtatttctcctagttggtgatgatatt |
145 |
Q |
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| T |
4154249 |
aaacttgtccttcaacatatttaaaggtaataatgcttaggttttctcctagtttgtgatgatatt |
4154314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 1496270 - 1496341
Alignment:
| Q |
176 |
ttaatttaccgagaaaaagtcggaatcatgcatggcccagaaaaatatgactgtcattagggccatgtaact |
247 |
Q |
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| T |
1496270 |
ttaatttaccgaaaagaagttggtatctttcatcgcccagaaaaatactactgtcattagtgccatgtaact |
1496341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 26791294 - 26791067
Alignment:
| Q |
15 |
atactgacttgcaggtatagagctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaacatgtttaaagcttatagtg |
114 |
Q |
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| T |
26791294 |
atactgacttgtaggtacaaagctgccatcatctcatcaggactatctctcaaagacctcacaccaaacgtgtcctg---cgtatttaaagcaaatgata |
26791198 |
T |
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| Q |
115 |
cttagtatttctcctagttggtgatgatatttaaatgnnnnnnntataaacatatataaatttaatttaccgagaaaaagtcggaatcatgcatggccca |
214 |
Q |
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| T |
26791197 |
cttaggatttctcctagttgatgatgatacttaaaagaca-----aaatagaaatataaa-ttgatttaccgagaaaaagtcagtatcgttcattgccca |
26791104 |
T |
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| Q |
215 |
gaaaaatatgactgtcattagggccatgtaactgcca |
251 |
Q |
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| T |
26791103 |
gaaaaatatgactgtcattagtgccatgtaactgcca |
26791067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 50277078 - 50276996
Alignment:
| Q |
12 |
ataatactgacttgcaggtatagagctgccatcatctcagcaggattatttctcaaagacctcacaccaaacttgtcctgcaa |
94 |
Q |
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| T |
50277078 |
ataatactgacttgtaggtagagggctgccatcatttcatcagggttgtttctgattgatctcacaccaaacttgtcctgcaa |
50276996 |
T |
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