View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8991_low_66 (Length: 243)
Name: NF8991_low_66
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_66 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5018207 - 5018010
Alignment:
| Q |
1 |
atgctagggatgacaggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaattgctacaaaatcttgtatatta--nnnnn |
98 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5018207 |
atgccagggatgacaggctatgagttacttaagaaaattaaggtacttatagcgttggtttggtggttaatggctacaaaatcttgtatattagtatttt |
5018108 |
T |
|
| Q |
99 |
nnnncttcacaatacagtattgctgcattatatatatgatatagtaaatttaacttcaccnnnnnnntcattatcatgacttcaccatagaaattccc |
196 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5018107 |
tttttttcacaatacagtattgttgcattatatatatgatatagtaaatttaacttcactaaaaaagtcattatcatgacttcaccatagaatttccc |
5018010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 23165690 - 23165886
Alignment:
| Q |
1 |
atgctagggatgacaggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaattgctacaaaatcttgtatatta-nnnnnn |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23165690 |
atgccagggatgacaggctatgagttacttaagaaaaataaggtacttatagcgttggtttggtggttaattgctacaaaattttgtatattagtatttt |
23165789 |
T |
|
| Q |
100 |
nnncttcacaatacagtattgctgcattatatatatgatatagtaaatttaacttcaccnnnnnnntcattatcatgacttcaccatagaaattccc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23165790 |
ttttttcacaatacagtattgctgcattatatatatgatatagtaaacttaacttcactaaaaaaatcattatcatgacttcaccatagaatttccc |
23165886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42883560 - 42883513
Alignment:
| Q |
1 |
atgctagggatgacaggctatgagttactttagaaaattaaggtactt |
48 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
42883560 |
atgccagggatgactggctatgagttgcttaagaaaattaaggtactt |
42883513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 9814301 - 9814457
Alignment:
| Q |
1 |
atgctagggatgacaggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaattgctacaaaatcttgtatatta-nnnnnn |
99 |
Q |
| |
|
|||| |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9814301 |
atgccagggatgagagactatgagttacttaagaaaattaaggtacttatagtgttggtttggtggttaattgctacaaaatcttgtatattagtatttt |
9814400 |
T |
|
| Q |
100 |
nnncttcacaatacagtattgctgcattatatatatgatatagtaaatttaacttca |
156 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9814401 |
ttttttcacaatagagtattgttgcattatatatatgatgtagtaaatttaacttca |
9814457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 42663629 - 42663833
Alignment:
| Q |
1 |
atgctagggatgacaggctatgagttactttagaaaattaaggtacttatagtgttggtttggtggttaattgctacaaaatcttgtatattannnnnnn |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42663629 |
atgccagggatgacaggctatgagttacttaagaaaattaaggtacttatagcgttggtttggtggttaatggctacaaaatcttgtatattagtatttt |
42663728 |
T |
|
| Q |
101 |
nnctt---------cacaatacagtattgctgcattatatatatgatatagtaaatttaacttcaccnnnnnnntcattatcatgacttcaccatagaaa |
191 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42663729 |
tttttttttttttctacaatacagtattgttgcattatatatatgatatagtaaatttaacttcactaaaaaagtcattatcatgacttcaccatagaat |
42663828 |
T |
|
| Q |
192 |
ttccc |
196 |
Q |
| |
|
||||| |
|
|
| T |
42663829 |
ttccc |
42663833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University