View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_70 (Length: 232)
Name: NF8991_low_70
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 46503183 - 46502967
Alignment:
| Q |
1 |
acaccctaatccatttctaataaccgtaacctgttatgcatgctaaggaaaacaatcaaccacgcattcctccaattggaagaagactttcattataaat |
100 |
Q |
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| T |
46503183 |
acacactaatccatttctaataaccataacctctaatgcatgctaaggaaaacaatcaaccacgcattcctccaattggaagaagactttcattataaat |
46503084 |
T |
|
| Q |
101 |
actcatttgactacatctatgccttccattaacccccatatcttcaatcacttcagcatttaaatcaaaccttgcaacttcttcatcataatttatgtag |
200 |
Q |
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| T |
46503083 |
aaccatttgactacatctatgccttccattaacccccatatcttcaatcacttcagcatttaaatcaaaccttgcaacttcttcatcataatttatgtag |
46502984 |
T |
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| Q |
201 |
aatatatcgccattctt |
217 |
Q |
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| T |
46502983 |
aatatatcgccattctt |
46502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 4041052 - 4041229
Alignment:
| Q |
40 |
atgctaaggaaaacaatcaaccacgcattcctccaattggaagaagactttcattataaatactcatttgactacatctatgccttccattaacccccat |
139 |
Q |
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| T |
4041052 |
atgctaatgaaaataatcaaccatgcattccttcaattggaagaaggctttcattataaataaccgtctgacaacatttataccttcctttaaccctaat |
4041151 |
T |
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| Q |
140 |
atcttcaatcacttcagcatttaaatcaaaccttgcaacttcttcatcataatttatgtagaatatatcgccattctt |
217 |
Q |
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| T |
4041152 |
atcttcaatcacctcagtatttaagtcaaaccttgcaacttcttcgtccttcttcatgtaaaatatatcagcattctt |
4041229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 40847198 - 40847244
Alignment:
| Q |
70 |
ctccaattggaagaagactttcattataaatactcatttgactacat |
116 |
Q |
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| T |
40847198 |
ctccgattggaagaagactttcattataaataaccatttgacaacat |
40847244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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