View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_76 (Length: 208)

Name: NF8991_low_76
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_76
NF8991_low_76
[»] chr5 (19 HSPs)
chr5 (18-193)||(37430242-37430417)
chr5 (26-184)||(37698287-37698445)
chr5 (23-193)||(37704153-37704323)
chr5 (29-184)||(37641372-37641530)
chr5 (18-180)||(37595828-37595990)
chr5 (26-121)||(37391449-37391544)
chr5 (26-180)||(37713122-37713276)
chr5 (29-133)||(37825458-37825562)
chr5 (18-184)||(37411806-37411975)
chr5 (23-104)||(37441518-37441599)
chr5 (29-130)||(37534648-37534749)
chr5 (26-121)||(37380831-37380926)
chr5 (29-111)||(37399314-37399396)
chr5 (26-131)||(37437248-37437353)
chr5 (148-184)||(37391585-37391621)
chr5 (148-180)||(37399451-37399483)
chr5 (148-180)||(37825393-37825425)
chr5 (148-184)||(37380959-37380995)
chr5 (148-180)||(37437199-37437231)
[»] chr4 (2 HSPs)
chr4 (26-184)||(24216245-24216403)
chr4 (23-130)||(16841384-16841491)
[»] chr3 (2 HSPs)
chr3 (26-121)||(14554616-14554711)
chr3 (148-184)||(14554526-14554562)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 37430417 - 37430242
Alignment:
Q  18 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaac 117  Q
    |||||||||||| |||| |||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  37430417 gttgatgctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaac 37430318  T
Q  118 acttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacag 193  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37430317 acttcatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaaccggcacag 37430242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 37698445 - 37698287
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 125  Q
    |||||||||||||||||||||| ||| ||||| | | ||||||| |||||||||||||||||||||||||||| ||||||||||   | |||||||  ||    
T  37698445 tgcttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtc 37698346  T
Q  126 tcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaa 184  Q
    |||||||| | ||||||||   |||||||||||||||| || |||||||||||||||||    
T  37698345 tcaacctgatatttggtctagatgttcctctttttcttccaggacagaatcttggaaaa 37698287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 37704323 - 37704153
Alignment:
Q  23 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 122  Q
    ||||||||||||||||||||||||| || |||||| ||| || |||  |||| || || |||||||||||||||||  ||||||||| | |||||||||     
T  37704323 tgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttc 37704224  T
Q  123 atctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacag 193  Q
    |||| |||| ||||||  ||||   ||||  ||||||||||| |||||||||||||||||||| |||||||    
T  37704223 atctaaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaaccggcacag 37704153  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 37641530 - 37641372
Alignment:
Q  29 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 128  Q
    ||||||||||||||||||| || |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| |    
T  37641530 ttactcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37641431  T
Q  129 acc---tggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaa 184  Q
    |||    | | ||| ||||   ||| |||||||||||||||||||||||||||||||||    
T  37641430 accggacgatattttgtctagttgtccctctttttctttcaagacagaatcttggaaaa 37641372  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 37595990 - 37595828
Alignment:
Q  18 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaac 117  Q
    |||| ||||||||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | |||||    
T  37595990 gttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaac 37595891  T
Q  118 acttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttgg 180  Q
    |||| |||||||||   |   |  | |   |||||||||||||||||||||||||||||||||    
T  37595890 acttcatctcaacccaatccgtactttggttgttcctctttttctttcaagacagaatcttgg 37595828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 37391449 - 37391544
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 121  Q
    |||||||||||||||||||||||||  ||||| ||| ||||| | |||| || ||||||||| |||||||||| |||||||||||| |||||||||    
T  37391449 tgcttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacactt 37391544  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 37713276 - 37713122
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 125  Q
    |||||||||||||||||||| | || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||    
T  37713276 tgcttactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatc 37713177  T
Q  126 tcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttgg 180  Q
    ||||||   |   |  | |   |||||||||||||||||||||||||||||||||    
T  37713176 tcaacccaatccgtactttggttgttcctctttttctttcaagacagaatcttgg 37713122  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 37825562 - 37825458
Alignment:
Q  29 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 128  Q
    ||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| |    
T  37825562 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37825463  T
Q  129 acctg 133  Q
    |||||    
T  37825462 acctg 37825458  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 37411806 - 37411975
Alignment:
Q  18 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaa- 116  Q
    |||| ||||| ||||||||||||||||||| || |||||| | | |||| || ||||||| | ||||||||||||||||||||||| | || || ||||     
T  37411806 gttgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaat 37411905  T
Q  117 --cacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaa 184  Q
      || || |||||| | || | ||||| ||   ||||||||||||||||| || ||||| ||||||||||    
T  37411906 ggcatttcatctcagcatgatatttggcctagttgttcctctttttctttgaaaacagattcttggaaaa 37411975  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 37441599 - 37441518
Alignment:
Q  23 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactc 104  Q
    |||||||||||||||||||||||||||| |||||| |||  ||| |  ||||||  |||||||||||||||||||| |||||    
T  37441599 tgctgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc 37441518  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 37534749 - 37534648
Alignment:
Q  29 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 128  Q
    ||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||| ||||| ||||||    
T  37534749 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctca 37534650  T
Q  129 ac 130  Q
    ||    
T  37534649 ac 37534648  T

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Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 37380831 - 37380926
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 121  Q
    |||||||||||||||||||| | || |||||| ||| ||||||  |||| |  |||||||||||||| ||||| |||||||||| | |||||||||    
T  37380831 tgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaacactt 37380926  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 37399314 - 37399396
Alignment:
Q  29 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcatttttt 111  Q
    |||||||||||||||| || || |||||| | | ||||||| ||||||  |||||||||||||||||||| || |||||||||    
T  37399314 ttactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcatttttt 37399396  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 37437353 - 37437248
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 125  Q
    |||||||||| |||||| || | || |||||| | | ||||||| ||||||  |||||||| ||||||||||| ||||| ||| || ||||||||| |||    
T  37437353 tgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatc 37437254  T
Q  126 tcaacc 131  Q
    ||||||    
T  37437253 tcaacc 37437248  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 37391585 - 37391621
Alignment:
Q  148 tgttcctctttttctttcaagacagaatcttggaaaa 184  Q
    |||||||||||||||||||||||||||||||||||||    
T  37391585 tgttcctctttttctttcaagacagaatcttggaaaa 37391621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 37399451 - 37399483
Alignment:
Q  148 tgttcctctttttctttcaagacagaatcttgg 180  Q
    |||||||||||||||||||||||||||||||||    
T  37399451 tgttcctctttttctttcaagacagaatcttgg 37399483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 37825425 - 37825393
Alignment:
Q  148 tgttcctctttttctttcaagacagaatcttgg 180  Q
    |||||||||||||||||||||||||||||||||    
T  37825425 tgttcctctttttctttcaagacagaatcttgg 37825393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 37380959 - 37380995
Alignment:
Q  148 tgttcctctttttctttcaagacagaatcttggaaaa 184  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  37380959 tgttccactttttctttcaagatagaatcttggaaaa 37380995  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 37437231 - 37437199
Alignment:
Q  148 tgttcctctttttctttcaagacagaatcttgg 180  Q
    |||| ||||||||||||||||||||||||||||    
T  37437231 tgtttctctttttctttcaagacagaatcttgg 37437199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 24216245 - 24216403
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 125  Q
    ||||||||||||||||||| || || | |||| | | ||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||    
T  24216245 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 24216344  T
Q  126 tcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaa 184  Q
    | |||| | | ||||||||   |||||| |||||| ||||| ||| ||||| |||||||    
T  24216345 tgaacccgatatttggtctatgtgttccactttttatttcaggacggaatcctggaaaa 24216403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 16841384 - 16841491
Alignment:
Q  23 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 122  Q
    ||||||||||||| ||||||||  | || || ||| | | ||||||  ||||||| ||||| |||||||| ||||| |||||||||| | |||||||||     
T  16841384 tgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 16841483  T
Q  123 atctcaac 130  Q
    ||||||||    
T  16841484 atctcaac 16841491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 14554711 - 14554616
Alignment:
Q  26 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 121  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | |||||||||    
T  14554711 tgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacactt 14554616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 14554562 - 14554526
Alignment:
Q  148 tgttcctctttttctttcaagacagaatcttggaaaa 184  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14554562 tgtttctctttttctttcaagacagaatcttggaaaa 14554526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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