View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8991_low_77 (Length: 205)
Name: NF8991_low_77
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8991_low_77 |
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| [»] scaffold1678 (1 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold0390 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 32303021 - 32302881
Alignment:
| Q |
19 |
caaggatcacaatagatctggccaacaacaatgaaagtatcatcaccatttggtgcagcatttggtgcaacacgagcagccaagacagatgagaagcaaa |
118 |
Q |
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| T |
32303021 |
caaggatcacaatagatctggccaacaacaatgaaaacatcatcaccatttggtgcagcatttggtgcaacacgagcagccaagacagatgagaagcaaa |
32302922 |
T |
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| Q |
119 |
aagcagagacaatgagagcaacgacaaaaaatgaccttgcc |
159 |
Q |
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| T |
32302921 |
aagcagagacaatgagagcaacgacagaaaatgaccttgcc |
32302881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 32295297 - 32295208
Alignment:
| Q |
68 |
ttggtgcagcatttggtgcaacacgagcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgacaaaaaatgaccttg |
157 |
Q |
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| T |
32295297 |
ttggtacatcatttggtgtaacacgagcagccaagacagatgagaagcaaaaagcagaaacaatgagagcaacgacaacaaatgaccttg |
32295208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 32276445 - 32276349
Alignment:
| Q |
66 |
atttggtgcagcatttggtgcaacac---gagcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgacaaaaaatgaccttgcc |
159 |
Q |
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| T |
32276445 |
atttgctgcagcatttggtgcaacttttggtgcagcgaagacagatgagaagcaaaaagctgagacaatgagagcaacgacaacaaatgatcttgcc |
32276349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 24433692 - 24433741
Alignment:
| Q |
95 |
cagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgaca |
144 |
Q |
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| T |
24433692 |
cagctaagacagatgagaagcaaaaagctgagacaatgagagcaacgaca |
24433741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 22139196 - 22139246
Alignment:
| Q |
94 |
gcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgaca |
144 |
Q |
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| T |
22139196 |
gcagccaagacagatgcgaagcaaaaggctgagacaatgagagcaacgaca |
22139246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 32241336 - 32241398
Alignment:
| Q |
97 |
gccaagacagatgagaagcaaaaagcagagacaatgagagcaacgacaaaaaatgaccttgcc |
159 |
Q |
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| T |
32241336 |
gccaagacagatgagatgcaaaaagctgaaacaatgagagcaacgatagcaaatgatcttgcc |
32241398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1678 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 964 - 1029
Alignment:
| Q |
94 |
gcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgacaaaaaatgaccttgcc |
159 |
Q |
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| T |
964 |
gcagccaagacatatgagaagcaaaaagctgagacaatgagagcaacgatagaaaatgatcttgcc |
1029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 3536 - 3486
Alignment:
| Q |
94 |
gcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgaca |
144 |
Q |
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| T |
3536 |
gcagccaagacagatgcgaagcaaaaggctgagacaatgagagcaacgaca |
3486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 2068 - 2018
Alignment:
| Q |
94 |
gcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgaca |
144 |
Q |
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| T |
2068 |
gcagccaagacagatgcgaagcaaaaggctgagacaatgagagcaacgaca |
2018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 15052 - 15002
Alignment:
| Q |
94 |
gcagccaagacagatgagaagcaaaaagcagagacaatgagagcaacgaca |
144 |
Q |
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| T |
15052 |
gcagccaagacagatgcgaagcaaaaggctgagacaatgagagcaacgaca |
15002 |
T |
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