View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8991_low_8 (Length: 763)

Name: NF8991_low_8
Description: NF8991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8991_low_8
NF8991_low_8
[»] chr4 (5 HSPs)
chr4 (10-639)||(50124015-50124641)
chr4 (659-746)||(50123884-50123971)
chr4 (171-320)||(8125531-8125686)
chr4 (700-744)||(53874040-53874084)
chr4 (342-501)||(23668670-23668828)
[»] chr7 (5 HSPs)
chr7 (10-540)||(39255120-39255648)
chr7 (198-540)||(30962094-30962438)
chr7 (10-103)||(30962441-30962530)
chr7 (548-641)||(30961867-30961955)
chr7 (549-632)||(39254902-39254981)
[»] chr3 (5 HSPs)
chr3 (10-540)||(21218717-21219242)
chr3 (10-451)||(52743754-52744193)
chr3 (483-540)||(52744200-52744257)
chr3 (548-641)||(52744396-52744484)
chr3 (548-641)||(21219381-21219469)
[»] chr2 (2 HSPs)
chr2 (265-540)||(43426263-43426539)
chr2 (548-639)||(43426039-43426125)
[»] chr6 (2 HSPs)
chr6 (299-540)||(10819620-10819860)
chr6 (569-634)||(10819998-10820062)
[»] chr8 (1 HSPs)
chr8 (392-514)||(9369519-9369642)


Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 10 - 639
Target Start/End: Complemental strand, 50124641 - 50124015
Alignment:
Q  10 tagattatactataagcaaaatacacttgattatttttatttgtctcccagtagttgagttatatgagactgacacaacatcggtacttccattccaatc 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50124641 tagattatactataagcaaaatacactagattatttttatttgtctcccagtagttgagttatatgagactgacacaacatcggtacttccattccaatc 50124542  T
Q  110 cttctaagattattgttcattcaccccttccaatctcattctccaactttgnnnnnnncctccacaatatcaataatattcactgcagatttatcagtca 209  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  50124541 cctctcagattattgttcattcaccccttccaatctcattctccaactttgtttttttcctccacaatatcaataatattcactgcagatttatcagtca 50124442  T
Q  210 tgtaaa-tccaatattagccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgccaagatatggcatg 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50124441 tgtaaaatccaatattagccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgccaagatatggcatg 50124342  T
Q  309 aacttaaagaaggattcacactttcataaataaattaaagataaaagaacaaatctttgatatccaataaagaacaaagcaataacaggattcacacttt 408  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50124341 aacttaaagaaggatttagactttcataaataaattaaagataaaagaacaaatctttgatatccaataaagaacaaagcaataacaggattcacacttt 50124242  T
Q  409 tatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaagagagcattt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50124241 tatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaagagagcattt 50124142  T
Q  509 ttcttcatcccacattgtttggtgcagattttagagagagatgattaaataaaagaaattattattgagtgttgataagcatatagtaagactcataaac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  50124141 ttcttcatcccacattgtttggtgcagattttagagagagatgatgaaataaaagaaat---tattgagtgttgat-agcatatagtaagactcataaac 50124046  T
Q  609 ttttataatccaaaggttgatcaacccttat 639  Q
    |||||||||||||||||||||||||||||||    
T  50124045 ttttataatccaaaggttgatcaacccttat 50124015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 659 - 746
Target Start/End: Complemental strand, 50123971 - 50123884
Alignment:
Q  659 tgtctcataccgtaggagatctattaaggtctcccaccggagggtatgatgaaaggaagggaattgagcgttggatagaggaagaaag 746  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50123971 tgtctcctaccgtaggagacctattaaggtctcccaccgaagggtatgatgaaaggaagggaattgagcgttggatagaggaagaaag 50123884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 8125686 - 8125531
Alignment:
Q  171 ccacaatatcaataatattcactgcagatttatcagtcatgt-aaatccaatattagccttcactgttctagttcaat---ctaacattata--ttaaac 264  Q
    |||||||||||| |||||| | |||||||||||||||||||| ||| ||||  || || |||||||||||||||||||    | |||||| |  ||||||    
T  8125686 ccacaatatcaacaatatttagtgcagatttatcagtcatgtaaaaaccaaattttgctttcactgttctagttcaataacattacattaaagtttaaac 8125587  T
Q  265 taattgtccatgtgtctgaaaaattagtgccaagatatggcatgaacttaaagaag 320  Q
    || |||| ||||||| |||||||| | |||||||||||||| |||| |||||||||    
T  8125586 tagttgtacatgtgtttgaaaaatcaatgccaagatatggcttgaaattaaagaag 8125531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 700 - 744
Target Start/End: Original strand, 53874040 - 53874084
Alignment:
Q  700 gggtatgatgaaaggaagggaattgagcgttggatagaggaagaa 744  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  53874040 gggtatgatgaaaggaagggaattgagcgttggatagaggaagaa 53874084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 501
Target Start/End: Complemental strand, 23668828 - 23668670
Alignment:
Q  342 attaaagataaaagaacaaatctttgatatccaataaagaacaaagcaataacaggattcacactttt-atatacacttaagagaaaatattacatctgc 440  Q
    ||||||| |||||||||||||| ||||| |  | ||| ||| ||| |||  |||| |||||||||||| ||| ||| | ||  ||||| |||||||||||    
T  23668828 attaaaggtaaaagaacaaatcgttgatgtatattaaggaataaatcaa--acagaattcacactttttataaacattcaattgaaaagattacatctgc 23668731  T
Q  441 aatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaagag 501  Q
    ||  ||||||| | |||||| ||||||| || ||||| ||| | ||||||| |||||||||    
T  23668730 aacaaagaacaaaacccatacaaattacaacaaaaaatcaattttttcaaccattaaagag 23668670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 540
Target Start/End: Complemental strand, 39255648 - 39255120
Alignment:
Q  10 tagattatactataagcaaaatacacttgattatttttatttgtctcccagtagttgagttatatgagactgacacaacatcggtacttccattccaatc 109  Q
    |||||||||||||||||||||| |||||||||||||||    |||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  39255648 tagattatactataagcaaaatgcacttgattattttt----gtctcccactagttgagttatatgagacagccacaacatcggtccttccattccaatc 39255553  T
Q  110 cttctaagattattgttcattcaccccttccaatctcattctccaactttgnnnnnnncctccacaatatcaataatattcactgcagatttatcagtca 209  Q
    | ||| |||| | |||||||||||||||||||||||||||||||| || ||       ||||||||||||||||||||||||||||| ||||||||||||    
T  39255552 cctctcagatcactgttcattcaccccttccaatctcattctccacctctgtttttttcctccacaatatcaataatattcactgcacatttatcagtca 39255453  T
Q  210 tgtaaatccaatattagccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgccaagatatggcatga 309  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39255452 tgtaaattcaatattggccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgacaagatatggcatga 39255353  T
Q  310 acttaaagaaggattcacactttcataaataaattaaaga--taaaagaacaaatctttgatatccaataaagaacaaagcaataacaggattcacactt 407  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39255352 acttaaagaaggattcacactttcataaataaattaaaaaaataaaagaacaaatctttgatatccaataaagaacaaagcaataacaagattcacactt 39255253  T
Q  408 ttatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaagagagcatt 507  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39255252 ttatatacactcaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaatgagagcatt 39255153  T
Q  508 tttcttcatcccacattgtttggtgcagatttt 540  Q
    |||||||||||||||||||||||||||||||||    
T  39255152 tttcttcatcccacattgtttggtgcagatttt 39255120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 198 - 540
Target Start/End: Complemental strand, 30962438 - 30962094
Alignment:
Q  198 atttatcagtcatgtaaa-tccaatattagccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgcca 296  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30962438 atttatcagtcatgtaaaattcaatattggccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtccca 30962339  T
Q  297 agatatggcatgaacttaaagaaggattcacactttcataaataaattaaaga-taaaagaacaaatctttgatatccaataaagaacaaagcaataaca 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |    
T  30962338 agatatggcatgaacttaaagaaggattcacactttcataaataaattaaaaaatacaagaacaaatctttgatatccaataaagaacaaagcaataaaa 30962239  T
Q  396 ggattcacacttttatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaatt 495  Q
     ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30962238 agattcacacttttgtatacactcaagagaaaatattacatcagcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaatt 30962139  T
Q  496 aaagagagcatttttcttcatcccacattgtttggtgcagatttt 540  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  30962138 aaagagagcatttttcttcatcgcacattgtttggtgcagatttt 30962094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 30962530 - 30962441
Alignment:
Q  10 tagattatactataagcaaaatacacttgattatttttatttgtctcccagtagttgagttatatgagactgacacaacatcggtacttccatt 103  Q
    |||||||||||||||||||||| |||||||||||||||    |||||||| ||||||||||||| ||||| | |||||||||||| ||||||||    
T  30962530 tagattatactataagcaaaatgcacttgattattttt----gtctcccactagttgagttatacgagacagccacaacatcggtccttccatt 30962441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 548 - 641
Target Start/End: Complemental strand, 30961955 - 30961867
Alignment:
Q  548 gatgattaaataaaagaaattattattgagtgttgataagcatatagtaagactcataaacttttataatccaaaggttgatcaacccttatct 641  Q
    |||||| |||||||||||||||||   ||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  30961955 gatgatgaaataaaagaaattatt---gagtgttgatagg-atatagtaagact-atagacttttataatccaaaggttgatcaatccttatct 30961867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 632
Target Start/End: Complemental strand, 39254981 - 39254902
Alignment:
Q  549 atgattaaataaaagaaattattattgagtgttgataagcatatagtaagactcataaacttttataatccaaaggttgatcaa 632  Q
    ||||| |||||||||||||||||   ||| ||||||| | |||||||||||||| || ||||||||||||||||||||||||||    
T  39254981 atgatgaaataaaagaaattatt---gagggttgatagg-atatagtaagactcgtagacttttataatccaaaggttgatcaa 39254902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 540
Target Start/End: Original strand, 21218717 - 21219242
Alignment:
Q  10 tagattatactataagcaaaatacacttgattatttttatttgtctcccagtagttgagttatatgagactgacacaacatcggtacttccattccaatc 109  Q
    |||||||||||||||||||||| |||||||||||||||    |||||||| ||||||||||||||||||| | |||||||||||| ||| ||||||||||    
T  21218717 tagattatactataagcaaaatgcacttgattattttt----gtctcccactagttgagttatatgagacagccacaacatcggtcctttcattccaatc 21218812  T
Q  110 cttctaagattattgttcattcaccccttccaatctcattctccaactttgnnnnnnncctccacaatatcaataatattcactgcagatttatcagtca 209  Q
    | ||| |||| | |||||||||||||||||||||||||||||||| || ||       |||||||||||||||||||||||||| || ||||||||||||    
T  21218813 catctcagatcactgttcattcaccccttccaatctcattctccacctctgtttttttcctccacaatatcaataatattcactacacatttatcagtca 21218912  T
Q  210 tgtaaa-tccaatattagccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgccaagatatggcatg 308  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21218913 tgtaaaatccaatattggccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtcccaagatatggcatg 21219012  T
Q  309 aacttaaagaaggattcacactttcataaataaattaaaga-taaaagaacaaatctttgatatccaataaagaacaaagcaataacaggattcacactt 407  Q
    ||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  21219013 aacttaaagaaggattcacactttcataaataaattaaaaaatacaagaacaaatctttgatatccaataaagaacaaagcaataaaaagattcacactt 21219112  T
Q  408 ttatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaagagagcatt 507  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21219113 ttgtatacactcaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaagagagcatt 21219212  T
Q  508 tttcttcatcccacattgtttggtgcagatttt 540  Q
    |   |||||| ||||||||||||||||||||||    
T  21219213 t---ttcatcgcacattgtttggtgcagatttt 21219242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 52743754 - 52744193
Alignment:
Q  10 tagattatactataagcaaaatacacttgattatttttatttgtctcccagtagttgagttatatgagactgacacaacatcggtacttccattccaatc 109  Q
    |||||||||||||||||||||| |||||||||||||||    |||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  52743754 tagattatactataagcaaaatgcacttgattattttt----gtctcccactagttgagttatatgagacagccacaacatcggtccttccattccaatc 52743849  T
Q  110 cttctaagattattgttcattcaccccttccaatctcattctccaactttgnnnnnnncctccacaatatcaataatattcactgcagatttatcagtca 209  Q
    | ||| |||| | ||||||||||||||||||||||||||||| || || ||       ||||||||||||||||||||||||||||| ||||||||||||    
T  52743850 cctctcagatcactgttcattcaccccttccaatctcattcttcacctctgtttttttcctccacaatatcaataatattcactgcacatttatcagtca 52743949  T
Q  210 tgtaaa-tccaatattagccttcactgttctagttcaatctaacattatattaaactaattgtccatgtgtctgaaaaattagtgccaagatatggcatg 308  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52743950 tgtaaaatccaatattggccttcactgttctagttcaatctaacattttattaaactaattgtccatgtgtctgaaaaattagtcccaagatatggcatg 52744049  T
Q  309 aacttaaagaaggattcacactttcataaataaatt-aaagataaaagaacaaatctttgatatccaataaagaacaaagcaataacaggattcacactt 407  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||    
T  52744050 aacttaaagaaggattcacactttcataaataaattaaaaaatacaagaacaaatctttgatatccaataaagaacaaaacaataaaaagattcacactt 52744149  T
Q  408 ttatatacacttaagagaaaatattacatctgcaatcaagaaca 451  Q
    || |||||||| ||||||||||||||||||||||||||||||||    
T  52744150 ttgtatacactcaagagaaaatattacatctgcaatcaagaaca 52744193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 52744200 - 52744257
Alignment:
Q  483 tctttcaacaattaaagagagcatttttcttcatcccacattgtttggtgcagatttt 540  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52744200 tctttcaacaattaaagagagcatttttcttcatcgcacattgtttggtgcagatttt 52744257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 548 - 641
Target Start/End: Original strand, 52744396 - 52744484
Alignment:
Q  548 gatgattaaataaaagaaattattattgagtgttgataagcatatagtaagactcataaacttttataatccaaaggttgatcaacccttatct 641  Q
    |||||| |||||||||||||||||   ||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  52744396 gatgatgaaataaaagaaattatt---gagtgttgatagg-atatagtaagact-atagacttttataatccaaaggttgatcaatccttatct 52744484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 641
Target Start/End: Original strand, 21219381 - 21219469
Alignment:
Q  548 gatgattaaataaaagaaattattattgagtgttgataagcatatagtaagactcataaacttttataatccaaaggttgatcaacccttatct 641  Q
    |||||| |||||||||||||||||   ||||||||||| | ||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||    
T  21219381 gatgatgaaataaaagaaattatt---gagtgttgatagg-atatagtaagact-atagacttttataatccaaaggttaatcaatccttatct 21219469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 265 - 540
Target Start/End: Complemental strand, 43426539 - 43426263
Alignment:
Q  265 taattgtccatgtgtctgaaaaattagtgccaagatatggcatgaacttaaagaaggattcacactttcataaataaattaaaga-taaaagaacaaatc 363  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||    
T  43426539 taatcgtccatgtgtctgaaaaattagtcccaagatatggcatgaacttaaagaaggattcacacttttataaataaattaaaaaatacaagaacaaatc 43426440  T
Q  364 tttgatatccaataaagaacaaagcaataacaggattcacacttttatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaa 463  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43426439 tttgatatccaataaagaacaaagcaataaaaagattcacacttttgtatacactcaagagaaaatattacatctgcaatcaagaacacaccccataaaa 43426340  T
Q  464 attactaccaaaaagcaaatctttcaacaattaaagagagcatttttcttcatcccacattgtttggtgcagatttt 540  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  43426339 attactaccaaaaagcaaatctttctacaattaaagagaacatttttcttcatcgcacattgtttggtgcagatttt 43426263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 548 - 639
Target Start/End: Complemental strand, 43426125 - 43426039
Alignment:
Q  548 gatgattaaataaaagaaattattattgagtgttgataagcatatagtaagactcataaacttttataatccaaaggttgatcaacccttat 639  Q
    |||||| |||||||||||||||||   ||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  43426125 gatgatgaaataaaagaaattatt---gagtgttgatagg-atatagtaagact-atagacttttataatccaaaggttgatcaatccttat 43426039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 299 - 540
Target Start/End: Original strand, 10819620 - 10819860
Alignment:
Q  299 atatggcatgaacttaaagaaggattcacactttcataaataaattaaagataaaagaacaaatctttgatatccaataaagaacaaagcaataacagga 398  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10819620 atatggcatgaacttaaa-aaggattcacactttcataaatcaattaaagataaaagaacaaatctttgatatccaataaagaacaaagcaataacatga 10819718  T
Q  399 ttcacacttttatatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaacaattaaa 498  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10819719 ttcacactcttatatacacttaagagaaaatattacatctgcattcaagaacacgccccataaaaattactaccaaaaagcaaatctttcaacaattaaa 10819818  T
Q  499 gagagcatttttcttcatcccacattgtttggtgcagatttt 540  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  10819819 gagagcatttttgttcatcccacattgtttggtgcagatttt 10819860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 10819998 - 10820062
Alignment:
Q  569 attattgagtgttgataagcatatagtaagactcataaacttttataatccaaaggttgatcaacc 634  Q
    ||||||||||||||||  | |||||||| |||||||| ||||||||||||||||||||||||||||    
T  10819998 attattgagtgttgatg-gtatatagtacgactcatagacttttataatccaaaggttgatcaacc 10820062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 392 - 514
Target Start/End: Complemental strand, 9369642 - 9369519
Alignment:
Q  392 aacaggattcacactttt-atatacacttaagagaaaatattacatctgcaatcaagaacacaccccataaaaattactaccaaaaagcaaatctttcaa 490  Q
    |||| ||||||||||||| ||| ||| | ||  ||||| |||||||||||||  ||||||||| |||||| ||||||| || ||||| ||||| || |||    
T  9369642 aacatgattcacacttttcataaacattcaaatgaaaagattacatctgcaacaaagaacacaacccatacaaattacaacaaaaaatcaaattttccaa 9369543  T
Q  491 caattaaagagagcatttttcttc 514  Q
    | |||||||||  |||| ||||||    
T  9369542 ccattaaagagttcattattcttc 9369519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University