View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8992_high_1 (Length: 645)
Name: NF8992_high_1
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8992_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 4776286 - 4775651
Alignment:
| Q |
1 |
catggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgccttacactacctttcaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4776286 |
catggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatc |
4776187 |
T |
|
| Q |
101 |
actcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776186 |
actcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatc |
4776087 |
T |
|
| Q |
201 |
tcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacag |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4776086 |
tcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacag |
4775987 |
T |
|
| Q |
301 |
ga----aacaggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaa |
396 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775986 |
gaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaa |
4775887 |
T |
|
| Q |
397 |
tatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaa |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |
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| T |
4775886 |
tatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagaca |
4775787 |
T |
|
| Q |
497 |
acattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgc |
596 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775786 |
acattggagctacatatctatgtgcaaaccctgtctttc---actctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgc |
4775690 |
T |
|
| Q |
597 |
caagaagcttcaagtttcacatgtcccaacaagtcatca |
635 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4775689 |
caagaagcttcaagtttcacatgtcccaacaagtcatca |
4775651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 248 - 635
Target Start/End: Complemental strand, 43061400 - 43061009
Alignment:
| Q |
248 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
343 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
344 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
443 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
444 |
cttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactct |
543 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| ||||||||| |||||||||||||||||| |||| ||| | |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttc---actat |
43061104 |
T |
|
| Q |
544 |
aggatgaagcatattgccatagattatcattttgttcgcgatctcgt---tgccgccaagaagcttcaagtttcacatgtcccaacaagtcatca |
635 |
Q |
| |
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|||||||| || |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061103 |
aggatgaaacacattgccatagattatcattttgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatca |
43061009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
496 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
536 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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