View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8992_high_2 (Length: 547)

Name: NF8992_high_2
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8992_high_2
NF8992_high_2
[»] chr3 (1 HSPs)
chr3 (15-534)||(38151965-38152483)
[»] chr8 (1 HSPs)
chr8 (87-312)||(35089533-35089758)


Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 15 - 534
Target Start/End: Complemental strand, 38152483 - 38151965
Alignment:
Q  15 aattttattatgttgattgaagacagcaaggttacataacagccagcgaaaggacatcgtgtgtacctcactaagtggtcctgaatttgcctttttattg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152483 aattttattatgttgattgaagacagcaaggttacataacagccagcgaaaggacatcgtgtgtacctcactaagtggtcctgaatttgcctttttattg 38152384  T
Q  115 ggggtgattacatgtattcccttgcgcagccagtcatcataatggcttgctatgacggagtcagctgtgcagtctactaaaaccgtgtttggtataacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152383 ggggtgattacatgtattcccttgcgcagccagtcatcataatggcttgctatgacggagtcagctgtgcagtctactaaaaccgtgtttggtataacat 38152284  T
Q  215 gatttccgtgtacatgttgaacaaatttttccaaatcagccacttcacctttttcctctcgaatttctctccactttactaagtcgattcccctgcaata 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152283 gatttccgtgtacatgttgaacaaatttttccaaatcagccacttcacctttttcctctcgaatttctctccactttactaagtcgattcccctgcaata 38152184  T
Q  315 agaaactatagttcatcataactgaagtagaaccaaattaaaatgactaatagagcagagataaagccaaggacatcagttaacaaattccaggatgcac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38152183 agaaactatagttcatcataactgaagtagaaccaaattaaaatgactaatagagcagagataaagccaaggacatcagttaacaaattccaggatgcac 38152084  T
Q  415 actgcatatcaaagaatttttcctgtcaacagatgaatgtagagtaaggagagttatcaaaccaataactttccaaaaatgtttatttcattccacctgg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38152083 actgcatatcaaagaatttttcctgtcaacagatgaatgtagagtaaggagag-tatcaaaccaataactttccaaaaatgtttatttcattccacctgg 38151985  T
Q  515 agatctagcaatcacagtga 534  Q
    ||||||||||||||||||||    
T  38151984 agatctagcaatcacagtga 38151965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 87 - 312
Target Start/End: Original strand, 35089533 - 35089758
Alignment:
Q  87 aagtggtcctgaatttgcctttttattgggggtgattacatgtattcccttgcgcagccagtcatcataatggcttgctatgacggagtcagctgtgcag 186  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||| |||| || ||| ||||  |||||||  || ||||  || ||||| ||||||    
T  35089533 aagtggtcccgaatttgccttcttattgggggtaattacatgtattcctttgcacaaccactcatagtaatggccagcaatgatagaatcagccgtgcag 35089632  T
Q  187 tctactaaaaccgtgtttggtataacatgatttccgtgtacatgttgaacaaatttttccaaatcagccacttcacctttttcctctcgaatttctctcc 286  Q
    ||||||||  ||||||||||||||| || |||||| || || || ||| ||||||||||||||| ||||||||| ||| ||||||| |||| |||| |||    
T  35089633 tctactaatgccgtgtttggtataaaattatttccatgcacgtgctgagcaaatttttccaaattagccacttctcctctttcctcccgaagttctttcc 35089732  T
Q  287 actttactaagtcgattcccctgcaa 312  Q
    ||||| ||||||| || |||||||||    
T  35089733 actttgctaagtcaatacccctgcaa 35089758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University