View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8992_high_4 (Length: 441)
Name: NF8992_high_4
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8992_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 39935389 - 39934980
Alignment:
| Q |
19 |
cacccaatattcctcatcatatccaacttcttcaatcgtaaaacccttatgtaattaattgaactttgattcctgctcaaacatcaccctcatatgccca |
118 |
Q |
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| T |
39935389 |
cacccaatattcctcatcatatccaacttcttcaatcgtaaaacccttctgtaattaattgaactttgattcctgctcaaacatcaccctcatatgccca |
39935290 |
T |
|
| Q |
119 |
agtggtaaagtcacaactaacaaaaggttaaaatgtatgtttggttctattttttaaggggtcaaaattgattctaatatgtttgattgctttgtagaat |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39935289 |
agtggtaaagtcgcaactaacaaaaggttaaaatgtatgtttggttctactttttaaggggtcaaaattgattctaatatgtttggttgctttgtagaat |
39935190 |
T |
|
| Q |
219 |
atgtaaatacaaataattttatattctactcatttttaatcaaaatcgattatatagaatcaattcactcaaaacaactcttcttgccatgcaaccaaac |
318 |
Q |
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| T |
39935189 |
atgtaaatacaaatcactttatattctactcatttttaatcaaaatcggttatatagaatcaattcactcaaaacaactcttcttgccatgcaaccaaac |
39935090 |
T |
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| Q |
319 |
atacgctactagattttaattttactatcattgatgtggaccaccatatccaaaaaatatattctactcctagacaaaagtttctttaaaaagtatcgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39935089 |
atacgctactagattttaattttactatcattgatgtggaccaccatatctaaaaaatatattctactcctagacaaaagtttctttaaaaagtatcgaa |
39934990 |
T |
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| Q |
419 |
tttaacacga |
428 |
Q |
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| T |
39934989 |
tttaaaacga |
39934980 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 37283353 - 37283422
Alignment:
| Q |
223 |
aaatacaaataattttatattctactcatttttaatcaaaatcgattatatagaatcaattcactcaaaa |
292 |
Q |
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| T |
37283353 |
aaatacaaataattttattttcaactcacttttaatctaaatcaattttatataatcaatttagtcaaaa |
37283422 |
T |
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