View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8992_high_6 (Length: 347)
Name: NF8992_high_6
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8992_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 43100397 - 43100530
Alignment:
| Q |
1 |
tttactgtctaatttctattcttc----aattattctgatctggtaaggtctgcagatgtgggctgctgttaaaaaggccgcagagtattttccaacaac |
96 |
Q |
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| T |
43100397 |
tttactgtctaatttctattcttcctataattattctgatctggtaaggtctgcagatgtgtgctgctgttaaaaaggccgcagagtattttccaacaac |
43100496 |
T |
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| Q |
97 |
aataacttgtctaagaagtcatgacaaggtagtt |
130 |
Q |
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| T |
43100497 |
aataacttgtctaagaagtcatgacaaggtagtt |
43100530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 43100609 - 43100679
Alignment:
| Q |
260 |
gtacaaccaaatttagacaaacttttgtgccaaatttgataatttttctcttatcgattaaacttaggtgc |
330 |
Q |
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| T |
43100609 |
gtacaaccaaatttagacaaacttttgtgccaaatttgataatttttctcttatcgattaaacttaggtgc |
43100679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13309524 - 13309657
Alignment:
| Q |
1 |
tttactgtctaatttctattcttc----aattattctgatctggtaaggtctgcagatgtgggctgctgttaaaaaggccgcagagtattttccaacaac |
96 |
Q |
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| T |
13309524 |
tttagtgtctaatttctattcttcctacaatgattctgatctggtaaggtctgcagatgtgtgctgctgttaaaaaggtcgcagagtattttacaacaac |
13309623 |
T |
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| Q |
97 |
aataacttgtctaagaagtcatgacaaggtagtt |
130 |
Q |
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| T |
13309624 |
aataacttgtctaagaagtcgtgacaaggtagtt |
13309657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13311421 - 13311531
Alignment:
| Q |
1 |
tttactgtctaatttctattcttc----aattattctgatctggtaaggtctgcagatgtgggctgctgttaaaaaggccgcagagtattttccaacaac |
96 |
Q |
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|||||||||||||| ||||||||| | | |||||||| | |||||||||||||||||| ||||||||| || ||| |||||||||||| ||||||| |
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| T |
13311421 |
tttactgtctaattactattcttcctacactgattctgatttagtaaggtctgcagatgtgtgctgctgtttaagaggtggcagagtatttttcaacaac |
13311520 |
T |
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| Q |
97 |
aataacttgtc |
107 |
Q |
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| T |
13311521 |
aataacttgtc |
13311531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 12908757 - 12908685
Alignment:
| Q |
29 |
attctgatctggtaaggtctgcagatgtgggctgctgttaaaaaggccgcagagtattttccaacaacaataa |
101 |
Q |
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| T |
12908757 |
attctgatctggtaagctctgcagatgcgtgctgctgttaaaaaggtggcagagtatttcccaacagcaataa |
12908685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 13309733 - 13309765
Alignment:
| Q |
260 |
gtacaaccaaatttagacaaacttttgtgccaa |
292 |
Q |
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| T |
13309733 |
gtacaaccaaattgagacaaacttttgtgccaa |
13309765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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