View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8992_low_1 (Length: 1002)
Name: NF8992_low_1
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8992_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 799; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 19 - 992
Target Start/End: Complemental strand, 45039453 - 45038482
Alignment:
| Q |
19 |
acaaaggagaatgtcaaaataaaacctgagagttgaggttatatatggccaacttagcatggttacaagcaattacataactacattagtctctctctta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45039453 |
acaaaggagaatgtcaaaataaaacctgagagttgaggttatatatggccaccttagcatggttacaagcaattacataactacattagtctctctctta |
45039354 |
T |
|
| Q |
119 |
gaaaacccaccatgagagttgttagagaacgattataaagtacaaggacatctacttaaaatggaacctacctctattctattattgactcataggttaa |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45039353 |
gaaaatccaccatgagagttgttagagaacgatcataaagtacaaggacatctacttaaaatggaacctacctctattctattattgactcataggttaa |
45039254 |
T |
|
| Q |
219 |
aagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactctactttctacattcactcgatgcctattaataagcatgaagccttacc |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45039253 |
aagagttcacagcactctttgaatcaagagtaaaaataacttgtttgaactctaattcctacattcactcgatgcctattaataagcatgaagccttacc |
45039154 |
T |
|
| Q |
319 |
cttctcaacattcaaaatagattgcaaccacaaattatgggctaccataaacatcttagactcatcccttaagcaaatcttaattccacccgtattgtgg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
45039153 |
cttctcaacattcaaaatagattgcaaccacaaattatgtgctaccataaacatcttagactcatccgttaagcaaatcctaattccacccgtattgtag |
45039054 |
T |
|
| Q |
419 |
tgctcnnnnnnngataagtcgattatgcacattaaaaggtactcttcaattcaatgttgatggtagttttttgggaaggccgtgagtgcataaatatcgg |
518 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
45039053 |
tgctcaaaaaaagataagtcgattatgcactttaaaaggtattcttcaattcaatgttgatggtagttttttgggaaggccgtgagtgcat-aatgtcgg |
45038955 |
T |
|
| Q |
519 |
tggtattatttctactatgatgaaaaattagataaccgatttattttattatgaagttagagatgatacattgttagttgagttttgtgttatttaaacg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45038954 |
cggtattatttctactatgatgaaaaattagataaccgatttattttattatgaagttagagatgatgcattgttagttgagttttgtgttatttaaacg |
45038855 |
T |
|
| Q |
619 |
agttttgatttttgttacaacaaagattataacaacatcatttgtgaaagtggttatttgaaaaccgctgaactacttattgctaatcttgatcatactt |
718 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||| ||||||||| |
|
|
| T |
45038854 |
agtcttgatttttgttacaacaaagattataacaacatcatttgtgaaagtggttatttgaaaaccaccgaactacttattgttgatcttaatcatactt |
45038755 |
T |
|
| Q |
719 |
gacacacttatactacctacatccttcatattaaacatgcaaaatgataacattacattagtannnnnnnnnnnataaacaaaatatgagtacaaatttt |
818 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45038754 |
gacacacttatactacttacatccttcatattaaacatgcaaaatgataacattacattagta-ttttttttttataaacaaaatatgagtacaaatttt |
45038656 |
T |
|
| Q |
819 |
ataactaaactgagatcacattttattttaggtactttgagacgatccgtatttgatataaagtctctcataagtttcaaaattatttttgactcatttt |
918 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45038655 |
ataactaaaccgagatcacattttattttaggtactttgagacgatctgtatttgatataaagtctctcataagtttcaaaattatttttgactcatctt |
45038556 |
T |
|
| Q |
919 |
ccagctgagcttataaaaagcatttcatcctcaaccagaaagcatgttgattgatcagcttatcaacaccaaac |
992 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45038555 |
cgagctgagcttacaaaaagcatttcatcctcaaccagaaagcatgttgattgatcagcttatcaacaccaaac |
45038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 43805037 - 43804903
Alignment:
| Q |
135 |
agttgttagagaacgattataaagtacaaggacatctacttaaaatggaacctacctctattctattatt-gactcataggttaaaagagttcacaacac |
233 |
Q |
| |
|
|||||||| |||||||| ||||| ||| | ||||||||||||||| |||||| ||| ||||||| ||| |||| | | ||||||| |||||||||| |
|
|
| T |
43805037 |
agttgttatagaacgatgataaaatacta---catctacttaaaatgcaacctatctcgattctatcatttgactaacaagttaaaac-gttcacaacag |
43804942 |
T |
|
| Q |
234 |
tctttgaatcaagagtaaaaataacttgtttgaactcta |
272 |
Q |
| |
|
|||||||||| | |||||| |||||| |||||||||||| |
|
|
| T |
43804941 |
tctttgaatctaaagtaaagataactggtttgaactcta |
43804903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 2442094 - 2441963
Alignment:
| Q |
214 |
gttaaaagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactctactttctacattcactcgatgcctattaataagcatgaagcc |
313 |
Q |
| |
|
||||||||| || || || ||||| ||||| ||| |||| |||||||| |||||||||| ||| | || |||||||| | |||||||||||| ||| |
|
|
| T |
2442094 |
gttaaaagaattgacgaccctcttagaatctagaataaagataacttgcttgaactctaatttttgcacccactcgataattgctaataagcatgacgcc |
2441995 |
T |
|
| Q |
314 |
ttacccttctcaacattcaaaatagattgcaa |
345 |
Q |
| |
|
||| ||| || ||||||||| |||| |||||| |
|
|
| T |
2441994 |
ttagcctccttaacattcaacataggttgcaa |
2441963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 670
Target Start/End: Original strand, 24015889 - 24015990
Alignment:
| Q |
568 |
tatgaagttagagatgatacattgttagttgagttttgtgttatttaaacgagttttgatttttgttacaacaaagattataacaacatcatttgtgaaa |
667 |
Q |
| |
|
||||||||| ||| |||| ||||||| |||||||| |||||||| ||| | || |||||||||||| || | || |||||||||||| |||||||| | |
|
|
| T |
24015889 |
tatgaagttggaggtgatgcattgttggttgagttgcgtgttattgaaatgtgtcttgatttttgttgtaatagag-ttataacaacattatttgtgaga |
24015987 |
T |
|
| Q |
668 |
gtg |
670 |
Q |
| |
|
||| |
|
|
| T |
24015988 |
gtg |
24015990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 41060263 - 41060362
Alignment:
| Q |
245 |
agagtaaaaataacttgtttgaactctactttctacattcactcgatgcctattaataagcatgaagccttacccttctcaacattcaaaatagattgca |
344 |
Q |
| |
|
||||||| |||||||| |||||||||| || | | || ||||||||| ||||||||||| |||||||| | ||| || |||||| ||||||| ||||| |
|
|
| T |
41060263 |
agagtaacgataacttgcttgaactctaattcccatatccactcgatgattattaataagcctgaagcctcatcctccttaacatttaaaataggttgca |
41060362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 12158769 - 12158715
Alignment:
| Q |
218 |
aaagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactcta |
272 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||| ||||||| |||||||||| |
|
|
| T |
12158769 |
aaagagtccacaacactctttgaatctaaagtaaagataactttgttgaactcta |
12158715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University