View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8992_low_12 (Length: 353)

Name: NF8992_low_12
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8992_low_12
NF8992_low_12
[»] chr1 (2 HSPs)
chr1 (5-347)||(19768953-19769295)
chr1 (264-347)||(45117976-45118059)
[»] scaffold0036 (1 HSPs)
scaffold0036 (240-347)||(98086-98193)
[»] scaffold0004 (1 HSPs)
scaffold0004 (272-347)||(246426-246501)
[»] chr2 (2 HSPs)
chr2 (264-347)||(2986005-2986088)
chr2 (271-344)||(10495996-10496069)
[»] chr4 (3 HSPs)
chr4 (270-347)||(26720871-26720948)
chr4 (264-332)||(8541360-8541428)
chr4 (295-347)||(44161950-44162002)
[»] chr8 (2 HSPs)
chr8 (264-332)||(23820695-23820763)
chr8 (264-332)||(40172843-40172911)
[»] chr5 (1 HSPs)
chr5 (240-311)||(29352320-29352391)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 19768953 - 19769295
Alignment:
Q  5 ttatcaaataataggttttcttcttccagatcccaaatccttctctggttataaccttctccgtcttcgccgtcagaaagatttcgtcttcgcattcaga 104  Q
    |||||||| || |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  19768953 ttatcaaagaagaggtcttcttcttccaaatcgcaaatccttctctggttataaccttctccgtcttcgccgtcaaaaagatttcatcttcgcattcaga 19769052  T
Q  105 gattttgttcgcgtgcgtctgattttcacctgtcggaggttttagagagtttcatctttgccataagagattttctgagtttcatctttgctgccgctga 204  Q
    |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |    
T  19769053 gattttgttcgcgtgcgtgtgattttcacctgttggaggttttggagagtttcatctttgctatcagagattttctgagtttcatcttcgctgccgctaa 19769152  T
Q  205 tgtcttggtaatgttgttagcaactgtgaaaggaatcgagagcttcttggccggcggattcagcggtgaattttctcctccgacctcctctctaggtctc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  19769153 tgtcttggtaatgttgttagcaactgtgaaaggaatcgagagcttctaggccggcggattcagctgtgaattttctcctccggcctcctctctaggtctc 19769252  T
Q  305 tccgtcccgttgcctcttccgcttcccgttcattcaacaccaa 347  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  19769253 tccttcccgttgcctcttccgcttcccgttcattcaacaccaa 19769295  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 45118059 - 45117976
Alignment:
Q  264 tcagcggtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccgttcattcaacaccaa 347  Q
    |||||||||||||||||||| |  |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  45118059 tcagcggtgaattttctcctgcagcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaa 45117976  T

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Target: scaffold0036 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 98086 - 98193
Alignment:
Q  240 tcgagagcttcttggccggcggattcagcggtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccgttcattc 339  Q
    |||| ||| ||| |||||||| ||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  98086 tcgaaagcgtctaggccggcgaattcagcagtgaattttctcctctggcctcctctctaggtctctctgtcccgttgcctcttccgcttcccgttcattc 98185  T
Q  340 aacaccaa 347  Q
    ||||||||    
T  98186 aacaccaa 98193  T

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Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 246426 - 246501
Alignment:
Q  272 gaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccgttcattcaacaccaa 347  Q
    ||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  246426 gaattttctcctcaggcctcctctccaggtctctccgtcctgttgcctcttccgcttcccgttcattcaacaccaa 246501  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 2986005 - 2986088
Alignment:
Q  264 tcagcggtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccgttcattcaacaccaa 347  Q
    |||||||||||||||||||| |  |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  2986005 tcagcggtgaattttctcctgctgcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaa 2986088  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 10496069 - 10495996
Alignment:
Q  271 tgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccgttcattcaacac 344  Q
    ||||||||||||  || |||||||| ||||||||||  ||||||||||||||| | ||||||||||||||||||    
T  10496069 tgaattttctcccgcggcctcctctataggtctctctatcccgttgcctcttctgtttcccgttcattcaacac 10495996  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 26720871 - 26720948
Alignment:
Q  270 gtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccgttcattcaacaccaa 347  Q
    |||||||||||| | ||||| ||||||||||||||| | ||||||||||||||  | |||||||||||||||||||||    
T  26720871 gtgaattttctcttgcgaccacctctctaggtctcttcatcccgttgcctcttttgattcccgttcattcaacaccaa 26720948  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 8541360 - 8541428
Alignment:
Q  264 tcagcggtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccg 332  Q
    ||||||||| |||||||||| || |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  8541360 tcagcggtggattttctcctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 8541428  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 44161950 - 44162002
Alignment:
Q  295 tctaggtctctccgtcccgttgcctcttccgcttcccgttcattcaacaccaa 347  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  44161950 tctaggtctctatgtcccgttgcttcttccgcttcccgttcattcaacaccaa 44162002  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 23820695 - 23820763
Alignment:
Q  264 tcagcggtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccg 332  Q
    ||||||||| |||||||||| || |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  23820695 tcagcggtggattttctcctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 23820763  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 40172911 - 40172843
Alignment:
Q  264 tcagcggtgaattttctcctccgacctcctctctaggtctctccgtcccgttgcctcttccgcttcccg 332  Q
    ||||||||| |||||||||| || |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  40172911 tcagcggtggattttctcctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 40172843  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 29352320 - 29352391
Alignment:
Q  240 tcgagagcttcttggccggcggattcagcggtgaattttctcctccgacctcctctctaggtctctccgtcc 311  Q
    |||| ||| ||| |||||||| ||||||| ||||||||||||||||  |  |||||||||||||||||||||    
T  29352320 tcgaaagcgtctgggccggcgaattcagcagtgaattttctcctccagcaacctctctaggtctctccgtcc 29352391  T

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