View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8992_low_20 (Length: 232)

Name: NF8992_low_20
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8992_low_20
NF8992_low_20
[»] chr1 (8 HSPs)
chr1 (14-216)||(42287004-42287206)
chr1 (14-214)||(12804550-12804750)
chr1 (23-208)||(50788864-50789049)
chr1 (14-213)||(12774824-12775023)
chr1 (87-196)||(36989300-36989409)
chr1 (120-216)||(28496143-28496239)
chr1 (126-212)||(31644099-31644185)
chr1 (39-213)||(4160289-4160463)
[»] chr8 (2 HSPs)
chr8 (120-216)||(5788760-5788856)
chr8 (29-216)||(33186637-33186824)
[»] chr2 (3 HSPs)
chr2 (69-216)||(38895894-38896041)
chr2 (120-213)||(40040782-40040875)
chr2 (66-190)||(42898237-42898361)
[»] chr4 (2 HSPs)
chr4 (126-216)||(22085543-22085633)
chr4 (91-216)||(30518185-30518310)
[»] chr7 (2 HSPs)
chr7 (129-216)||(40749392-40749479)
chr7 (126-187)||(44150866-44150927)
[»] chr5 (1 HSPs)
chr5 (120-193)||(1983169-1983242)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 42287004 - 42287206
Alignment:
Q  14 agagccaaggagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287004 agagccaaggagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttc 42287103  T
Q  114 tctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtacta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42287104 tctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtacta 42287203  T
Q  214 gag 216  Q
    |||    
T  42287204 gag 42287206  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 12804750 - 12804550
Alignment:
Q  14 agagccaaggagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttc 113  Q
    |||||||| ||||||||||||||||||||| || || ||||| || || || ||||||||||| ||| | || || || ||||||||||| ||||| ||     
T  12804750 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttt 12804651  T
Q  114 tctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtacta 213  Q
    ||| | ||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12804650 tctagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtacta 12804551  T
Q  214 g 214  Q
    |    
T  12804550 g 12804550  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 50789049 - 50788864
Alignment:
Q  23 gagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaag 122  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| ||  | || || || ||||| ||||| || || | |||||| ||     
T  50789049 gagaaaggtttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaa 50788950  T
Q  123 cacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtgg 208  Q
    || ||||||||||| ||||| ||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  50788949 catggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtgg 50788864  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 12774824 - 12775023
Alignment:
Q  14 agagccaaggagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttc 113  Q
    |||||||| ||||||||||||||||||||| || || ||||| || || || ||||||||||| ||| | || || || ||||||||||| || || |      
T  12774824 agagccaaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactat 12774923  T
Q  114 tctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtacta 213  Q
    | | | ||||| |||||||| || ||||| |||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  12774924 tttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtacta 12775023  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 36989300 - 36989409
Alignment:
Q  87 gatctaactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattgga 186  Q
    ||||| ||||||||||||||||| || | | | ||||| |||||||| |||||||||||||| || || || ||||||||||||||||||||||||||||    
T  36989300 gatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattgga 36989399  T
Q  187 aagcacattc 196  Q
    |||| |||||    
T  36989400 aagctcattc 36989409  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 28496239 - 28496143
Alignment:
Q  120 aagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagag 216  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||| || ||||||||||||||||| ||| | || || |||||||| ||||    
T  28496239 aagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagag 28496143  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 31644185 - 31644099
Alignment:
Q  126 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtact 212  Q
    |||||||| || ||||||||||| || ||||||||||  ||||||||||| |||||||||||||| || ||||| || |||||||||    
T  31644185 ggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtact 31644099  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 4160289 - 4160463
Alignment:
Q  39 tgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtgagaagaagt 138  Q
    ||||| ||||| ||||| || || || ||||||||||| ||  | || || ||||||||||| || ||||| || |   | |||||||||||||||||||    
T  4160289 tgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagt 4160388  T
Q  139 ggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtacta 213  Q
    |||| ||||| ||||| || ||   |||||| ||||| || ||||||||||| ||||| || | |||||| ||||    
T  4160389 ggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcacta 4160463  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 5788856 - 5788760
Alignment:
Q  120 aagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagag 216  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||    
T  5788856 aagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagag 5788760  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 33186637 - 33186824
Alignment:
Q  29 ggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggt 128  Q
    ||||||| | |||||||| || || || || ||||| || ||||| ||||||||||| ||| ||||||| || |||||||| || | | | || || |||    
T  33186637 ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggt 33186736  T
Q  129 gagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagag 216  Q
    ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |||||   ||||||| ||||||    
T  33186737 gagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagag 33186824  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 38896041 - 38895894
Alignment:
Q  69 ccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatg 168  Q
    |||||||| ||||| |||||| ||||||| || || ||||| || | | | || |||||||||||||||||||| ||||| || ||||||||    ||||    
T  38896041 ccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatg 38895942  T
Q  169 ctgttcaatctgattggaaagcacattctaagacttgtggtactagag 216  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||    
T  38895941 ctgttcaatcggattggaaagcacactcaaagacttgtggtactagag 38895894  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 40040782 - 40040875
Alignment:
Q  120 aagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtacta 213  Q
    ||||||||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||| || |||  ||||| |||||| ||||    
T  40040782 aagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcacta 40040875  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 42898237 - 42898361
Alignment:
Q  66 gacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaat 165  Q
    ||||| |||||||| || || || |||||||| || || ||||| ||||   | ||||||||||||||||||||||||||||| || ||||| ||||| |    
T  42898237 gacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagt 42898336  T
Q  166 atgctgttcaatctgattggaaagc 190  Q
    |||| |||||||| || ||||||||    
T  42898337 atgcagttcaatcagactggaaagc 42898361  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 22085633 - 22085543
Alignment:
Q  126 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagag 216  Q
    ||||||||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| |||   |||| |||||| |||||||    
T  22085633 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagag 22085543  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 30518310 - 30518185
Alignment:
Q  91 taactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagc 190  Q
    ||||||| || |||||||| || | | | ||||| ||||| ||||||||||| ||||| || ||||||||    ||||||||||| || |||||||||||    
T  30518310 taactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagc 30518211  T
Q  191 acattctaagacttgtggtactagag 216  Q
     || || || || |||||||||||||    
T  30518210 tcactcaaaaacatgtggtactagag 30518185  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 40749392 - 40749479
Alignment:
Q  129 gagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagag 216  Q
    |||||||| ||||| ||||| || || || ||||||||||| || ||||||||||||||||| ||  |||| ||||||||||||||||    
T  40749392 gagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagag 40749479  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 44150927 - 44150866
Alignment:
Q  126 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaa 187  Q
    ||||||||||| ||||||||||| || ||||| || | ||||||||||||||| ||||||||    
T  44150927 ggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaa 44150866  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 1983169 - 1983242
Alignment:
Q  120 aagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcaca 193  Q
    |||||| |||||||||||||||| ||||| || ||||||||    |||| ||||||||| ||||||||||||||    
T  1983169 aagcacagtgagaagaagtggaagtgtgagaagtgctcaaaattttatgttgttcaatcggattggaaagcaca 1983242  T

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