View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8992_low_6 (Length: 486)
Name: NF8992_low_6
Description: NF8992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8992_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 13653396 - 13653733
Alignment:
| Q |
18 |
gaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgta |
117 |
Q |
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| T |
13653396 |
gaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgta |
13653495 |
T |
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| Q |
118 |
aatcctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactagcccat-aaatatggggtgtcccctacaattctcctact |
216 |
Q |
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| T |
13653496 |
aatcctgatggttcctcctacaacaacctccaagatttgattcagtatataaggtctactagcccataaaatatggggtgtcccctacaattctcctact |
13653595 |
T |
|
| Q |
217 |
agaaacttctcatatttttatgtttatcaacatcacaaaaagaagtatgtatttgaaatacttacttcaaaaacatcgagggacaaagactgtatcctca |
316 |
Q |
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| T |
13653596 |
aaaaacttctcatatttttatgtctatcaacatcacaaaaagaagtatgtatttgaaatacatacttcaaaaacatcgagggacaaagactgtatcctca |
13653695 |
T |
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| Q |
317 |
taaaataatttgatcact-gtcttgtctcttttgtatt |
353 |
Q |
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| T |
13653696 |
taaaataatttgatcactcttcttgtctcttttgtatt |
13653733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 365 - 473
Target Start/End: Original strand, 13653817 - 13653925
Alignment:
| Q |
365 |
gttaagaatcacctgtttgcacgatattttcttcacttttgatgcaaataagtggttttcatatttatcaagtttttcttgtgtatttttgtgtgtgaat |
464 |
Q |
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| T |
13653817 |
gttaagaatcacctatttgcacaatattttcttcactcttgatgcaaataagtggttttcatatttatcaaatttttcttgtgtatttttgtgtgtgaat |
13653916 |
T |
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| Q |
465 |
tcatcgtct |
473 |
Q |
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||||||||| |
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| T |
13653917 |
tcatcgtct |
13653925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 13658873 - 13659127
Alignment:
| Q |
22 |
gttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatc |
121 |
Q |
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||||| |||||||||||||||||| |||||||||| | ||||||||||||| | ||| || | | || || | ||||| ||||||||||| | || |
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| T |
13658873 |
gttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatagctaagttggcatccaagagtgtgagtc |
13658972 |
T |
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| Q |
122 |
ctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactagcccataa-atatggggtgtcccctacaattctcctactagaa |
220 |
Q |
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| T |
13658973 |
ctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactagcccataagatgtgaatttttccctttaattctcctactaaaa |
13659072 |
T |
|
| Q |
221 |
acttctcatattttta----tgtttatcaacatcacaaaaagaagtatgtatttg |
271 |
Q |
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|||||||||||||||| ||| ||| || |||| ||||| ||||||||||||| |
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| T |
13659073 |
acttctcatatttttataagtgtgtatgaagatcataaaaataagtatgtatttg |
13659127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 13648345 - 13648510
Alignment:
| Q |
22 |
gttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatc |
121 |
Q |
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||||| |||||||||||||||||| |||||||||| | ||||||||||||| | ||| || | | || || | ||||| ||||||||||| | || |
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| T |
13648345 |
gttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatagctaagttggcatccaagagtgtgagtc |
13648444 |
T |
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| Q |
122 |
ctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactagcccataaa |
187 |
Q |
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||| ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
13648445 |
ctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactagcccgtaaa |
13648510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 473
Target Start/End: Complemental strand, 31391931 - 31391867
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaagttttt-cttgtgtatttttgtgtgtgaattcatcgtct |
473 |
Q |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| | ||||| ||| |||||| |
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| T |
31391931 |
aaataagtggttttcacatttatcaagtttttccttatgtatttttttttgtgatttcgtcgtct |
31391867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 7883413 - 7883369
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaagtttttcttgtgtattttt |
454 |
Q |
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|||||||||||||||| || ||||||||||||||| ||| ||||| |
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| T |
7883413 |
aaataagtggttttcacatctatcaagtttttcttttgtgttttt |
7883369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 23230560 - 23230608
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaag-tttttcttgtgtatttttgtg |
457 |
Q |
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||||||||||||||||||| ||||||| |||||||| ||| |||||||| |
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| T |
23230560 |
aaataagtggttttcatatctatcaagttttttcttttgtgtttttgtg |
23230608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 39171766 - 39171734
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaagtttttc |
442 |
Q |
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| T |
39171766 |
aaataagtggttttcatatctatcaagtttttc |
39171734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 40556615 - 40556655
Alignment:
| Q |
400 |
cttttgatgcaaataagtggttttcatatttatcaagtttt |
440 |
Q |
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| T |
40556615 |
cttttgatataaataagtggttttcatatctatcaagtttt |
40556655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 39311028 - 39310996
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaagtttttc |
442 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
39311028 |
aaataagtggttttcacatttatcaagtttttc |
39310996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 31918906 - 31918954
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaag-tttttcttgtgtatttttgtg |
457 |
Q |
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|||||||||||||||| || ||||||| |||||||| |||||||||||| |
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| T |
31918906 |
aaataagtggttttcacatatatcaagttttttcttttgtatttttgtg |
31918954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 45415476 - 45415524
Alignment:
| Q |
410 |
aaataagtggttttcatatttatcaag-tttttcttgtgtatttttgtg |
457 |
Q |
| |
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|||||||||||||||| || ||||||| |||||||||||| |||||||| |
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| T |
45415476 |
aaataagtggttttcacatctatcaagttttttcttgtgtttttttgtg |
45415524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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