View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8993_low_1 (Length: 885)

Name: NF8993_low_1
Description: NF8993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8993_low_1
NF8993_low_1
[»] chr6 (14 HSPs)
chr6 (105-869)||(1453225-1453989)
chr6 (105-869)||(1464917-1465681)
chr6 (53-255)||(1459540-1459746)
chr6 (79-255)||(1470922-1471098)
chr6 (56-256)||(370783-370987)
chr6 (305-472)||(1459317-1459478)
chr6 (357-472)||(370570-370685)
chr6 (357-421)||(1441935-1441999)
chr6 (79-256)||(176216-176387)
chr6 (307-417)||(176438-176548)
chr6 (53-256)||(7564749-7564956)
chr6 (199-256)||(1442106-1442163)
chr6 (438-507)||(176599-176668)
chr6 (592-664)||(1441673-1441746)
[»] chr7 (2 HSPs)
chr7 (56-342)||(3926908-3927198)
chr7 (734-829)||(41705074-41705169)
[»] chr4 (2 HSPs)
chr4 (79-255)||(55419658-55419834)
chr4 (366-474)||(55419942-55420050)
[»] chr3 (4 HSPs)
chr3 (209-254)||(2456255-2456300)
chr3 (211-254)||(1438003-1438046)
chr3 (209-255)||(3754606-3754652)
chr3 (209-254)||(771499-771544)
[»] scaffold0044 (1 HSPs)
scaffold0044 (203-254)||(89143-89194)
[»] chr5 (1 HSPs)
chr5 (209-255)||(11081819-11081865)


Alignment Details
Target: chr6 (Bit Score: 725; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 105 - 869
Target Start/End: Complemental strand, 1453989 - 1453225
Alignment:
Q  105 cgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttgga 204  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1453989 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttgga 1453890  T
Q  205 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453889 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 1453790  T
Q  305 ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaaga 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1453789 ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaaga 1453690  T
Q  405 ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1453689 ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcgaatattc 1453590  T
Q  505 tccaaatacgttttcttctgttattctgtttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata 604  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453589 tccaaatacgttttcttctgttattctatttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata 1453490  T
Q  605 tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttatagttattttgtttagcttgggtatgattca 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  1453489 tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttattgttattttgtttagcttgtgtatgattca 1453390  T
Q  705 tctatggttatgtttgacagaagtctgagttcgatccaacgcatggtggtgcagcgacaaccttggttacgtggttcatgtgtcacacaaggcatgttgg 804  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  1453389 tctatggttatgtttgacagaagtctaagttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttgg 1453290  T
Q  805 taagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453289 taagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct 1453225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 105 - 869
Target Start/End: Complemental strand, 1465681 - 1464917
Alignment:
Q  105 cgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttgga 204  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1465681 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttgga 1465582  T
Q  205 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465581 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 1465482  T
Q  305 ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaaga 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1465481 ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaaga 1465382  T
Q  405 ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1465381 ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcgaatattc 1465282  T
Q  505 tccaaatacgttttcttctgttattctgtttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata 604  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465281 tccaaatacgttttcttctgttattctatttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata 1465182  T
Q  605 tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttatagttattttgtttagcttgggtatgattca 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  1465181 tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttattgttattttgtttagcttgtgtatgattca 1465082  T
Q  705 tctatggttatgtttgacagaagtctgagttcgatccaacgcatggtggtgcagcgacaaccttggttacgtggttcatgtgtcacacaaggcatgttgg 804  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  1465081 tctatggttatgtttgacagaagtctaagttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttgg 1464982  T
Q  805 taagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1464981 taagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct 1464917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 1459746 - 1459540
Alignment:
Q  53 ctcttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagc 148  Q
    ||||||| |||| ||||||||||| ||    ||||||||||||||||||||||||| ||||||  ||| |||| |||||||  |||||||| |||| |||    
T  1459746 ctcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagc 1459647  T
Q  149 ttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaata 248  Q
    ||||| || | |||||||| ||||||| |||||||| |  | ||    | ||||||||| |||||||||||  ||| |||||||||||| ||||||| ||    
T  1459646 ttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggacta 1459547  T
Q  249 aattgtt 255  Q
    |||||||    
T  1459546 aattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 1471098 - 1470922
Alignment:
Q  79 aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc 178  Q
    ||||||||||||||||||||||||||  ||||| |||| || | |||||||  |||||| | |||| |||||||| || |||||||||| ||||||||||    
T  1471098 aggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatc 1470999  T
Q  179 cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgtt 255  Q
    |||||| |  | ||    | ||||||||| |||||||||||  |||||||||||||||| ||||||  |||||||||    
T  1470998 cttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 370987 - 370783
Alignment:
Q  56 ttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttg 151  Q
    ||||||||| ||||||||||| ||    | ||| |||| ||||||||||||||||||||| |||| ||||||||||||  |||||| ||| ||   ||||    
T  370987 ttcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttg 370888  T
Q  152 ggagtatctagggattgcttatgcatccttgcttacgctaatgactctt-tggatatctgggttatgaagtattatggaaataaagactcttggaataaa 250  Q
    |  || ||||||||||||||||||||||||||| |  ||||  ||| || |||   | |||||||||||| |||||||||||||||| ||||||| ||||    
T  370887 gaggtttctagggattgcttatgcatccttgctcagactaa-aacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaa 370789  T
Q  251 ttgttc 256  Q
    ||||||    
T  370788 ttgttc 370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 305 - 472
Target Start/End: Complemental strand, 1459478 - 1459317
Alignment:
Q  305 ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaaga 404  Q
    |||||||||||||| ||||| |||| ||||||| || | || ||  || || || ||||||||||||||||||||||||||| |  |||||||||| |||    
T  1459478 ctgctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgtatttcaaagattcctgaga 1459379  T
Q  405 ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaacct 472  Q
    |||| ||      || ||  |||||||| |||||||||||||  |||||||||| |||||||| ||||    
T  1459378 ttcatgg------ttttactaggtttacttctaatgtctacgcagagagtctcatatcaccttgacct 1459317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 472
Target Start/End: Complemental strand, 370685 - 370570
Alignment:
Q  357 aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 456  Q
    |||||||||||||||||||||||||||  |||  ||||| |||||| |||||| |||||| ||| |     || | ||||||||||||||||||||||||    
T  370685 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttcaacttcattcatctctaatgtctacgttgagagtct 370586  T
Q  457 cacatcaccttaacct 472  Q
    || |||||||| ||||    
T  370585 catatcaccttgacct 370570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 1441999 - 1441935
Alignment:
Q  357 aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttct 421  Q
    ||||||||| ||| |||||||||||| ||||| ||||||||| ||| ||||||||||||||||||    
T  1441999 aggtatatgcttataattacaagaatggtactgtaaagattcataatattcaaggcctcccttct 1441935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 176216 - 176387
Alignment:
Q  79 aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc 178  Q
    |||||| ||||| ||||  |||||||| |||||||||| |||||||       |||||||| |||| |||||||| || |||||||||||| ||||| ||    
T  176216 aggaaatgagtcgtatcgggagatttcccagcccgattatggtctac------ctctgcataacttcagcttgggggtttctagggattgcctatgcgtc 176309  T
Q  179 cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 256  Q
    |||||| || |  |    | ||||||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||    
T  176310 cttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattcttggactaaattgttc 176387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 176438 - 176548
Alignment:
Q  307 gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaagatt 406  Q
    |||||||||||| ||||||||   |||||||||| |  |||| |   || |||||||||||||||||||||||| | || |  |||||| ||| ||||||    
T  176438 gctttatatttctgaggaggaccaccaagtgttcgtgtacttcatcaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt 176537  T
Q  407 caaggcctccc 417  Q
    |||||||||||    
T  176538 caaggcctccc 176548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 256
Target Start/End: Complemental strand, 7564956 - 7564749
Alignment:
Q  53 ctcttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagc 148  Q
    |||||||||||| |||||||| || ||    || |||||||||||||||||||||| |||||| |||| |||| |  |  |   ||||| | |||| |||    
T  7564956 ctcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagc 7564857  T
Q  149 ttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaata 248  Q
    || || || | |||||||||||||||  |||||||| || |||     | |||| |||| |||||||||||| |||||||||| || || ||||||| ||    
T  7564856 ttaggggtttgtagggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggacta 7564757  T
Q  249 aattgttc 256  Q
    ||||||||    
T  7564756 aattgttc 7564749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 1442163 - 1442106
Alignment:
Q  199 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 256  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||||||    
T  1442163 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 507
Target Start/End: Original strand, 176599 - 176668
Alignment:
Q  438 atgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattctcc 507  Q
    ||||||| ||||||||||||| |||||||| ||||  ||||||| || || || |||||||| |||||||    
T  176599 atgtctatgttgagagtctcatatcaccttgacctacttgctttgctctgctggctctcaaagattctcc 176668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 664
Target Start/End: Complemental strand, 1441746 - 1441673
Alignment:
Q  592 tattaactttatatttttctattt-gatgatacattactcactttctgttactttatagaattaatccttaatt 664  Q
    |||||||| | |||||  |||||| |||||||| ||||||| | ||||||| ||||| ||||||||||||||||    
T  1441746 tattaactctttatttcactatttcgatgatacgttactcagtgtctgttagtttatggaattaatccttaatt 1441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 56 - 342
Target Start/End: Original strand, 3926908 - 3927198
Alignment:
Q  56 ttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttg 151  Q
    ||||||||| ||||||||||| ||    ||||||||||| |||||||||||||| | ||||||||||||||| |||||| |  | |||  ||| | |||     
T  3926908 ttcatgggtcattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtcttgatgatccggttcatatcttcacctta 3927007  T
Q  152 ggagtatctagggattgcttatgcatccttgcttacgctaatgactct-ttggatatctgggttatgaagtattatggaaataaagactcttggaataaa 250  Q
    || || |||| ||||||||| ||  |||||| |||| || |  ||| | |||| ||| |||||||||||| |||||||||||||| | ||||||| ||||    
T  3927008 ggggtttctaaggattgcttgtgtgtccttgtttacactga-aactttgttgggtatttgggttatgaaggattatggaaataaaaattcttggactaaa 3927106  T
Q  251 ttgttcgccattccgttcatggaactttgttacaatggtattggttttttcagtctgctttatatttccgaggaggatggccaagtgttctt 342  Q
    ||||||||  |||||| |    || || ||||  ||||| |||||||| ||  ||||| ||||||||| |||||||||| ||||||||||||    
T  3927107 ttgttcgcagttccgtacgccaaagttggttatcatggttttggttttgtcgatctgcattatatttctgaggaggatgaccaagtgttctt 3927198  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 734 - 829
Target Start/End: Complemental strand, 41705169 - 41705074
Alignment:
Q  734 ttcgatccaacgcatggtggtgcagcgacaaccttggttacgtggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca 829  Q
    ||||||||| || |||||| |||||| || |||||||||||  ||||||||||||||||||| ||||  ||||||||||| |||||  ||||||||    
T  41705169 ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca 41705074  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 55419658 - 55419834
Alignment:
Q  79 aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc 178  Q
    |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||  |  ||    |||||| |||| | || || | ||||||||||||| ||    
T  55419658 aggaaatgagtcttatcaagtgattccgcatcccgagtatggtctagatgaaccgttggtctacttgaacttgagtgtttccaaggattgcttatgcgtc 55419757  T
Q  179 cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgtt 255  Q
     ||||| || | |||   | ||||||||||||| ||||||||  ||||||||||||||| ||||||| |||||||||    
T  55419758 gttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 474
Target Start/End: Original strand, 55419942 - 55420050
Alignment:
Q  366 tttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcacc 465  Q
    |||||||||| |||||| ||| | ||||||||||| | ||||||||||||||||| ||   ||| | ||||| ||||||| |||| ||||| | ||||||    
T  55419942 tttacaattataagaatggtaatgtaaagattcctgacattcaaggcctcccttcaaattcgttcaactctattgtctactttgaaagtctgatatcacc 55420041  T
Q  466 ttaacctta 474  Q
    || ||||||    
T  55420042 ttgacctta 55420050  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 2456255 - 2456300
Alignment:
Q  209 tgggttatgaagtattatggaaataaagactcttggaataaattgt 254  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||    
T  2456255 tgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 1438003 - 1438046
Alignment:
Q  211 ggttatgaagtattatggaaataaagactcttggaataaattgt 254  Q
    |||||||||| | |||||||||||||||||||||| ||||||||    
T  1438003 ggttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 3754606 - 3754652
Alignment:
Q  209 tgggttatgaagtattatggaaataaagactcttggaataaattgtt 255  Q
    |||||||||||| | |||||||||||||| ||||||| |||||||||    
T  3754606 tgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 771544 - 771499
Alignment:
Q  209 tgggttatgaagtattatggaaataaagactcttggaataaattgt 254  Q
    |||||||||||| | |||||||||| ||||||||||| ||||||||    
T  771544 tgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 89143 - 89194
Alignment:
Q  203 gatatctgggttatgaagtattatggaaataaagactcttggaataaattgt 254  Q
    ||||| |||||||||||| | |||||||||||||| ||||||| ||||||||    
T  89143 gatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 11081819 - 11081865
Alignment:
Q  209 tgggttatgaagtattatggaaataaagactcttggaataaattgtt 255  Q
    |||||||||||| | |||||||||||||| ||||||| |||||||||    
T  11081819 tgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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