View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8993_low_11 (Length: 349)

Name: NF8993_low_11
Description: NF8993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8993_low_11
NF8993_low_11
[»] chr6 (3 HSPs)
chr6 (15-282)||(32980861-32981130)
chr6 (242-334)||(32980759-32980851)
chr6 (125-166)||(9024175-9024216)
[»] chr7 (2 HSPs)
chr7 (126-164)||(2525844-2525882)
chr7 (130-166)||(38134410-38134446)
[»] chr5 (2 HSPs)
chr5 (124-166)||(28296347-28296389)
chr5 (125-166)||(40211975-40212016)
[»] chr4 (1 HSPs)
chr4 (128-166)||(25390888-25390926)
[»] chr2 (3 HSPs)
chr2 (125-166)||(45000845-45000886)
chr2 (126-166)||(18570991-18571031)
chr2 (126-166)||(31026714-31026754)
[»] chr3 (1 HSPs)
chr3 (126-166)||(40697858-40697898)
[»] chr1 (1 HSPs)
chr1 (126-166)||(19637787-19637827)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 32981130 - 32980861
Alignment:
Q  15 gaggaatgatgtgaaagctatagtattgacaggtaattttgatttggattgcatgtttgtcatgatctttgtagcaccaacacgtctgatc--aaaggca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  32981130 gaggaatgatgtgaaagctatagtattgacaggtaattttgatttggattgcatgtttgtcatgatctttgtagcaccaacacgtccgatctcaaaggca 32981031  T
Q  113 tgtccgtgtccgacgacaccgacacatatgaatatattgaattatgtcattttcatgtctcaatgtttgtgtcatgtctggtgtatgcatctgtgcttgt 212  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  32981030 tgtcagtgtctgacgacaccgacacatatgattatattgaattatgtcatttacatgtctcaatgtttgtgtcatgtctggtgtatgtatctgtgcttgt 32980931  T
Q  213 gctccaaaggtcaatgannnnnnnnnnnnatgaaaatgggtttgttcagtttatggatacaatttgattt 282  Q
    |||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  32980930 gctccaaaggtcaatgattttttgtttttatgaaaatgggtttgttcagtttatggatacaatttgattt 32980861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 32980851 - 32980759
Alignment:
Q  242 atgaaaatgggtttgttcagtttatggatacaatttgatttgattgttgaagtaagaaaatttgtaattgtttatccctttctccgttgaatt 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32980851 atgaaaatgggtttgttcagtttatggatacaatttgatttgattgttgaagtaagaaaatttgtaattgtttatccctttctccgttgaatt 32980759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 9024175 - 9024216
Alignment:
Q  125 acgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  9024175 acgacactgacacatatgattacattgaattatgtcattttc 9024216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 2525844 - 2525882
Alignment:
Q  126 cgacaccgacacatatgaatatattgaattatgtcattt 164  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2525844 cgacaccgacacatatgattatattgaattatgtcattt 2525882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 38134410 - 38134446
Alignment:
Q  130 accgacacatatgaatatattgaattatgtcattttc 166  Q
    |||||||||||||| || |||||||||||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttc 38134446  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 28296389 - 28296347
Alignment:
Q  124 gacgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    ||||||||| |||||||||| || |||||||||||||||||||    
T  28296389 gacgacaccaacacatatgagtacattgaattatgtcattttc 28296347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 40212016 - 40211975
Alignment:
Q  125 acgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    |||||||||| |||||||| ||||||||||||||| ||||||    
T  40212016 acgacaccgatacatatgattatattgaattatgtaattttc 40211975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 25390888 - 25390926
Alignment:
Q  128 acaccgacacatatgaatatattgaattatgtcattttc 166  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  25390888 acaccgacacatatggttatattgaattatgtcattttc 25390926  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 45000845 - 45000886
Alignment:
Q  125 acgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    ||||||||||||||||||| || |||||||| ||||||||||    
T  45000845 acgacaccgacacatatgattacattgaattgtgtcattttc 45000886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 18571031 - 18570991
Alignment:
Q  126 cgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  18571031 cgacactgacacatatgattacattgaattatgtcattttc 18570991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 31026754 - 31026714
Alignment:
Q  126 cgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    ||||||||||| |||||| || |||||||||||||||||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttc 31026714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 40697858 - 40697898
Alignment:
Q  126 cgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  40697858 cgacaccgacacatatggttagattgaattatgtcattttc 40697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 19637827 - 19637787
Alignment:
Q  126 cgacaccgacacatatgaatatattgaattatgtcattttc 166  Q
    |||||||||||||||||| || ||||||| |||||||||||    
T  19637827 cgacaccgacacatatgattacattgaataatgtcattttc 19637787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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