View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8993_low_7 (Length: 420)
Name: NF8993_low_7
Description: NF8993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8993_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 43 - 416
Target Start/End: Complemental strand, 43372949 - 43372580
Alignment:
| Q |
43 |
caaaggccctaagcttacaaataaaatacaaaaagccctaagcctagagttgtgtaaatttcattttatttcaattttttcaaagtgtggtatattctcg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
43372949 |
caaaggccctaagcttacaaataaaatacaaaaagccctaagcctagagttgtgtaaatttcattttatttcaattttttcaaagtgtggtataatccca |
43372850 |
T |
|
| Q |
143 |
aaatgctgctatatcattaatttctctatatctgataccgaactaagtatgttttgtgatattaattaataatcaatattataagtttcctatactaaga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43372849 |
aaatgctgctatatcattaatttctctatatctgataccgaactaagtatgttttatgatattaat----aatcaatattataagtttcctatactaaga |
43372754 |
T |
|
| Q |
243 |
aaaactaccatacaacaaaatctgaccgtggtgactattacctatcgtttgttgcaacttggaattactcacaatagagcagcatatatttctgtctgca |
342 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43372753 |
aaaactaccatacaacaaaatctgatcgtggtaactattacctatcgtttgttgcaacttggaattactcacaatagagcagcatatatttctgtctgca |
43372654 |
T |
|
| Q |
343 |
tatataacattatttctctgaaacaatctaaacaaccagcttctctgggatgaagaatctgatcaaccagaata |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43372653 |
tatataacattatttctctgaaacaatctaaacaaccagcttctctgggatgaagaatctgatcaaccagaata |
43372580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University