View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8994_low_1 (Length: 561)
Name: NF8994_low_1
Description: NF8994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8994_low_1 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Complemental strand, 3771 - 3235
Alignment:
| Q |
9 |
agtttcgtgttgatgaccaaacaaaaaacattttttagatgactccttaatgcagaatgacctttgatgagaaggatgtgtacttacaatatcgaccgac |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3771 |
agtttcatgttgatgaccaaacaaaaaacattttttagatgactccttaatgcagaatgacctttgatgagaaggatgtgtacttacaatatcgaccgac |
3672 |
T |
|
| Q |
109 |
ttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcctgagagcagaaaagtctcctccagt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3671 |
ttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcctgagagcagaaaagtctcctccagt |
3572 |
T |
|
| Q |
209 |
catagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaagaaataaatgtgagtctttttgtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3571 |
catagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaagaaataaatgtgagtctttttgtt |
3472 |
T |
|
| Q |
309 |
ccttcagctcagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagtattatatgcatgcattnnnnnnntc |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
3471 |
ccttcagctcagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagtattatatgcatgcattaaaaaaatc |
3372 |
T |
|
| Q |
409 |
agctcacaatcgcatgtctatggtgcagaatagagtttaacaagttgattctaacatacaataaaattctgttggattcatgtgtccaatttgcaaagca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3371 |
agctcacaatcgcatgtctatggtgcagaatagagtttaacaagttgattctaacatacaataaaattctgttggattcatgtgtccaatttgcaaagca |
3272 |
T |
|
| Q |
509 |
aaatctttggtcaaatcaatgtgttggacaatggatc |
545 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3271 |
aaatctttggtcaaatcaatgtgttggacaatggatc |
3235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Complemental strand, 3771 - 3235
Alignment:
| Q |
9 |
agtttcgtgttgatgaccaaacaaaaaacattttttagatgactccttaatgcagaatgacctttgatgagaaggatgtgtacttacaatatcgaccgac |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3771 |
agtttcatgttgatgaccaaacaaaaaacattttttagatgactccttaatgcagaatgacctttgatgagaaggatgtgtacttacaatatcgaccgac |
3672 |
T |
|
| Q |
109 |
ttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcctgagagcagaaaagtctcctccagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3671 |
ttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcctgagagcagaaaagtctcctccagt |
3572 |
T |
|
| Q |
209 |
catagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaagaaataaatgtgagtctttttgtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3571 |
catagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaagaaataaatgtgagtctttttgtt |
3472 |
T |
|
| Q |
309 |
ccttcagctcagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagtattatatgcatgcattnnnnnnntc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
3471 |
ccttcagctcagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagtattatatgcatgcattaaaaaaatc |
3372 |
T |
|
| Q |
409 |
agctcacaatcgcatgtctatggtgcagaatagagtttaacaagttgattctaacatacaataaaattctgttggattcatgtgtccaatttgcaaagca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3371 |
agctcacaatcgcatgtctatggtgcagaatagagtttaacaagttgattctaacatacaataaaattctgttggattcatgtgtccaatttgcaaagca |
3272 |
T |
|
| Q |
509 |
aaatctttggtcaaatcaatgtgttggacaatggatc |
545 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3271 |
aaatctttggtcaaatcaatgtgttggacaatggatc |
3235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 30 - 545
Target Start/End: Original strand, 44371106 - 44371617
Alignment:
| Q |
30 |
caaaaaacattttttagatgactccttaatgcagaatgacctttgatgagaaggatgtgtacttacaatatcgaccgacttggttcattgtttctgaccc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44371106 |
caaaaaacattttttagatgactccttaatgcagaatgacctttgatgagaaggatgtgtacttacaatatcgac----ttggttcattgtttctgaccc |
44371201 |
T |
|
| Q |
130 |
tgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcctgagagcagaaaagtctcctccagtcatagtggattctgtcatgga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371202 |
tgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcctgagagcagaaaagtctcctccagtcatagtggattctgtcatgga |
44371301 |
T |
|
| Q |
230 |
accatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaagaaataaatgtgagtctttttgttccttcagctcagacaaggtat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
44371302 |
accatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaagaaataaatgtgagtctttttgttccttcagctaagacaaggtat |
44371401 |
T |
|
| Q |
330 |
aagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagtattatatgcatgcattnnnnnnntcagctcacaatcgcatgtctat |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
44371402 |
aagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagtattatatgcatgcattaaaaaaatcagctcacaatcgcatgtctat |
44371501 |
T |
|
| Q |
430 |
ggtgcagaatagagtttaacaagttgattctaacatacaataaaattctgttggattcatgtgtccaatttgcaaagcaaaatctttggtcaaatcaatg |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44371502 |
ggtgcagaatagagtttaacaagttgattctaacatacaataaaattctgttggattcatgtgtccaatttgcaaagcaaaatctttggtcaaatcaatg |
44371601 |
T |
|
| Q |
530 |
tgttggacaatggatc |
545 |
Q |
| |
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|||||||||||||||| |
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| T |
44371602 |
tgttggacaatggatc |
44371617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 545
Target Start/End: Complemental strand, 1739160 - 1739014
Alignment:
| Q |
407 |
tcagctcacaatcgcatgtctatggtgcagaatagagtttaacaa-------gttgattctaacatacaataaaattctgttggattcatgtgtccaatt |
499 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||||||||||| | ||| ||||| | ||||||| | ||||||||||||||||||||||| || |
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|
| T |
1739160 |
tcagctcacaaccacatgtgtatggtgtggaatagagtttaaccatgatgctgttaattctgaaatacaatcagattctgttggattcatgtgtccagtt |
1739061 |
T |
|
| Q |
500 |
tgcaaagc-aaaatctttggtcaaatcaatgtgttggacaatggatc |
545 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
1739060 |
tgcaaggcaaaaatctctggtcaaatcaatgtgttggacagtggatc |
1739014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 1727133 - 1727051
Alignment:
| Q |
464 |
atacaataaaattctgttggattcatgtgtccaatttgcaaagcaaa-atctttggtcaaatcaatgtgttggacaatggatc |
545 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||| ||||||| ||||| |||| || |||||||||||||||||| | |||||| |
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|
| T |
1727133 |
atacaatcaaattctgttggattaacgtgtccagtttgcaaggcaaatatctatgatcaaatcaatgtgttggagagtggatc |
1727051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 534
Target Start/End: Complemental strand, 25088848 - 25088788
Alignment:
| Q |
475 |
ttctgttggattcatgtgtccaatttgcaaagc-aaaatctttggtcaaatcaatgtgttg |
534 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| | |||||||| |||||||||| |
|
|
| T |
25088848 |
ttctgctggattcatgtgtccaatttgcaaagcaaaaatatctggtcaaagcaatgtgttg |
25088788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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