View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8994_low_2 (Length: 433)
Name: NF8994_low_2
Description: NF8994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8994_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 24884998 - 24884577
Alignment:
| Q |
1 |
cttattactaaaatatgatgctatgtcttaaccaggacaattgcttacactaaccacactgtcctccccgaagcactggagaaatggtctcaatctgtaa |
100 |
Q |
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| T |
24884998 |
cttattgctaaaatatgatgctatgtcttaaccaggacaattgcttacactaaccacactgtcctccccgaagcactggagaaatggtctcaatctgtaa |
24884899 |
T |
|
| Q |
101 |
tgtggaaactgcttcctcgtcacatggaaatcatagaagaaattgacaaaagagtaagttgattgtttaccttgtttctcttcaacaaactcagtgaaag |
200 |
Q |
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| T |
24884898 |
tgtggaaactgcttcctcgtcacatggaaatcatagaagaaattgacaaaagagtaagttgattgtttaccttgtttctcttcaacaaactcagtgaaag |
24884799 |
T |
|
| Q |
201 |
gtgtgcttgacatgttcattgtgcacatcttaaaatgtatgcagttcactacaatgataagtaaaacccgactggaccttgagagtgaactttccaacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884798 |
gtgtgcttgacatgttcattgtgcacatcttaaaatgtatgcagttcactacaatgataagtaaaacccgactggaccttgagagtgaactttccaacat |
24884699 |
T |
|
| Q |
301 |
gcgcattttggacaataatccccagaagccagttgttcggatggcaaatttgtgtgtggtttctgctcatactgtaagtgatgcacttatttaaatctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24884698 |
gcgcattttggacaataatccccagaagccagttgttcggatggcaaatttgtgtgtggtttctgctcatactgtaagtgatgcgcttatttaaatctca |
24884599 |
T |
|
| Q |
401 |
tccatcttaccctattgatgtc |
422 |
Q |
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|||||||||||||||||||||| |
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| T |
24884598 |
tccatcttaccctattgatgtc |
24884577 |
T |
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