View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8994_low_3 (Length: 362)
Name: NF8994_low_3
Description: NF8994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8994_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 7104179 - 7103842
Alignment:
| Q |
18 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtttagagtagtatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7104179 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatca |
7104080 |
T |
|
| Q |
118 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7104079 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
7103980 |
T |
|
| Q |
218 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7103979 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
7103880 |
T |
|
| Q |
318 |
agttatgaagtgctgcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7103879 |
agttatgaagtgctgcacatgccaacacaagttctgct |
7103842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 8790451 - 8790788
Alignment:
| Q |
18 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtttagagtagtatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8790451 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatca |
8790550 |
T |
|
| Q |
118 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8790551 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
8790650 |
T |
|
| Q |
218 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8790651 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
8790750 |
T |
|
| Q |
318 |
agttatgaagtgctgcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8790751 |
agttatgaagtgctgcacatgccaacacaagttctgct |
8790788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 38234256 - 38233919
Alignment:
| Q |
18 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtttagagtagtatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38234256 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatca |
38234157 |
T |
|
| Q |
118 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38234156 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
38234057 |
T |
|
| Q |
218 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38234056 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
38233957 |
T |
|
| Q |
318 |
agttatgaagtgctgcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38233956 |
agttatgaagtgctgcacatgccaacacaagttctgct |
38233919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 48198600 - 48198263
Alignment:
| Q |
18 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtttagagtagtatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48198600 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatca |
48198501 |
T |
|
| Q |
118 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48198500 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
48198401 |
T |
|
| Q |
218 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48198400 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
48198301 |
T |
|
| Q |
318 |
agttatgaagtgctgcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48198300 |
agttatgaagtgctgcacatgccaacacaagttctgct |
48198263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 32 - 355
Target Start/End: Complemental strand, 48207242 - 48206919
Alignment:
| Q |
32 |
taaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtttagagtagtatcacggtattccttgta |
131 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48207242 |
taaaacaaggttatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatcacggtattccttgta |
48207143 |
T |
|
| Q |
132 |
catctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48207142 |
catctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttc |
48207043 |
T |
|
| Q |
232 |
atgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatgaagtgct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48207042 |
atgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatgaagtgct |
48206943 |
T |
|
| Q |
332 |
gcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
48206942 |
gcacatgccaacacaagttctgct |
48206919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 132 - 358
Target Start/End: Original strand, 20112112 - 20112339
Alignment:
| Q |
132 |
catctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttc |
231 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20112112 |
catctctccgcatatctgaacctatattagtcctccatagattagcatcttctcgttctcgctcttgtgtttgaacattgagttcataattattgtcttc |
20112211 |
T |
|
| Q |
232 |
atgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatgaagtgct |
331 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20112212 |
atgaataggtaacattgaatatgaatatgaagactcgttagaaggttcaattggaaattaatcggaacgacattctttgcgaagaaagttatgaagtgct |
20112311 |
T |
|
| Q |
332 |
gca-catgccaacacaggttctgctcgt |
358 |
Q |
| |
|
||| |||||||||||| ||| ||||||| |
|
|
| T |
20112312 |
gcatcatgccaacacaagttatgctcgt |
20112339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 190 - 355
Target Start/End: Original strand, 19004013 - 19004178
Alignment:
| Q |
190 |
ttgctcttgtgtttgaacattgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19004013 |
ttgctcttgtgtttgaacattgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaat |
19004112 |
T |
|
| Q |
290 |
tcatcggaacgacattctttgcgaagaaagttatgaagtgctgcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19004113 |
tcatcggaacgacattctttgcgaagaaagttatgaagtgctgcacatgccaacacaagttctgct |
19004178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 136 - 355
Target Start/End: Complemental strand, 23326585 - 23326366
Alignment:
| Q |
136 |
tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttcatga |
235 |
Q |
| |
|
||||||||| ||| |||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
23326585 |
tctccacatgtctgaacctataccagtcctccataaattagcatcttctcgtttttgctcttgtgtttgaatattgagttcataattattgtcttagtga |
23326486 |
T |
|
| Q |
236 |
ataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatgaagtgctgcac |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||| ||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
23326485 |
ataggtaacattgaagatgaagatgaagactcgttagtaggttcatttggaatttcattggaacaacattctttgcaaagaaatttatgaagtgttgcac |
23326386 |
T |
|
| Q |
336 |
atgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
23326385 |
atgccaacacaagttctgct |
23326366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 342
Target Start/End: Complemental strand, 17566338 - 17566139
Alignment:
| Q |
143 |
atatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttcatgaataggta |
242 |
Q |
| |
|
||||||||||||| | |||| | ||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||| ||||| | | |
|
|
| T |
17566338 |
atatctaaacctatactagttcaccataaattagcatcttctcgtaactgctcttgtgtttgaacattggcttcataattattgacttcgtgaattgaca |
17566239 |
T |
|
| Q |
243 |
acattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatgaagtgctgcacatgccaa |
342 |
Q |
| |
|
| |||||||||||||||| ||| | |||| |||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17566238 |
aagttgaagatgaagatgaggacccattagtaggttcaattggaaattcattcgagcgacattatttgcgaagaatgttatgaagtgctgcacatgccaa |
17566139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 342
Target Start/End: Original strand, 17566545 - 17566690
Alignment:
| Q |
191 |
tgctcttgtgtttgaacattgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaatt |
290 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||||| ||| | |||||||||||| ||||||||||||| || |||||||| || ||||| |
|
|
| T |
17566545 |
tgctcttgtgtttaaacattgggttcataattattgtctttgtgattcggtaacattgaa------gatgaagactcgtcagtaggttcaactgaaaatt |
17566638 |
T |
|
| Q |
291 |
catcggaacgacattctttgcgaagaaagttatgaagtgctgcacatgccaa |
342 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17566639 |
catcataacgatattctttgcgaagaaagttatgaagtgttgcacatgccaa |
17566690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 12894625 - 12894962
Alignment:
| Q |
18 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtttagagtagtatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12894625 |
gtaatgaagtttcttaaaacaagattatcttcagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatca |
12894724 |
T |
|
| Q |
118 |
cggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12894725 |
cggtattccttgtacatctctccacatatctaaacctatattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttca |
12894824 |
T |
|
| Q |
218 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12894825 |
tcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaa |
12894924 |
T |
|
| Q |
318 |
agttatgaagtgctgcacatgccaacacaggttctgct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12894925 |
agttatgaagtgctgcacatgccaacacaagttctgct |
12894962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 46035891 - 46036052
Alignment:
| Q |
18 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattaactgaatcaccgtt-----tagagtag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
46035891 |
gtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagagtag |
46035990 |
T |
|
| Q |
113 |
tatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatatt |
174 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46035991 |
tatcacggtatttcttgtacatctctccacatatctaaacctatattagtcctccatatatt |
46036052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 344
Target Start/End: Complemental strand, 18929616 - 18929414
Alignment:
| Q |
136 |
tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttcatga |
235 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| |||||||| ||||| || || |||||||||||||||| || || || ||||||||||| ||| |
|
|
| T |
18929616 |
tctccacatatctaaacctatattattcctccataaattagcattttctcatttttactcttgtgtttgaacaatggattaataattattgtcttattga |
18929517 |
T |
|
| Q |
236 |
ataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatgaagtgctgcac |
335 |
Q |
| |
|
| ||||||| |||| ||||||| |||| | |||||| || |||||||| | || ||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
18929516 |
acgggtaaca------ccaaagacgaagacttgttaatatgttcaagtgaaaattcattgaaataacattatttacgaagaaagttatgaagtgttgcac |
18929423 |
T |
|
| Q |
336 |
atgccaaca |
344 |
Q |
| |
|
|||||||| |
|
|
| T |
18929422 |
ttgccaaca |
18929414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 39709492 - 39709458
Alignment:
| Q |
100 |
ccgtttagagtagtatcacggtattccttgtacat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39709492 |
ccgtttagagtagtatcacggtattccttgtacat |
39709458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 6055405 - 6055476
Alignment:
| Q |
160 |
agtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttc |
231 |
Q |
| |
|
||||||||||| | || | | |||||||| ||||| ||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
6055405 |
agtcctccataaactaacctattctcgtttttgctattgtgtttgaataatgagttcataattattgtcttc |
6055476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 39709824 - 39709795
Alignment:
| Q |
19 |
taatgaagtttcttaaaacaagattatctt |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39709824 |
taatgaagtttcttaaaacaagattatctt |
39709795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 41869810 - 41869774
Alignment:
| Q |
98 |
caccgtttagagtagtatcacggtattccttgtacat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41869810 |
caccgtttagagtagtatcacggtattccttgtacat |
41869774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University