View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_high_16 (Length: 228)
Name: NF8995_1D_high_16
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 238466 - 238663
Alignment:
| Q |
9 |
ttctcatgggagccagtttgcaataaataatttattgtgaagatcctttctaagtaatttttaattacttactcttaggaagtgtgtatatatagagtgg |
108 |
Q |
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| T |
238466 |
ttctcatgggagccagtttgcaataaataatttattgtgaagatcctttctaagtaatttttaattacttactcttaggaagtgtgtatatatagagtgg |
238565 |
T |
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| Q |
109 |
gattgtgaaggaccctcctcaccatcagcatcaataataactgcatgcacgtgttttaaggtttgagtttggaagaatatagtttctctcctctctct |
206 |
Q |
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| T |
238566 |
gattgtgaaggaccctcctcaccatcagcatcaataataactgcatgcacgtgttttagggtttgagtttggaagaatatagtttctctcctctctct |
238663 |
T |
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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 22677376 - 22677432
Alignment:
| Q |
88 |
aagtgtgtatatatagagtgggattgtgaaggaccctcctcaccatcagcatcaata |
144 |
Q |
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| T |
22677376 |
aagtgtgtatatatagagtgggattgtgaaggaccctcctcaccatcaccatcaata |
22677432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 22677433 - 22677465
Alignment:
| Q |
173 |
gagtttggaagaatatagtttctctcctctctc |
205 |
Q |
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| T |
22677433 |
gagtttggaagaatataatttctctcctctctc |
22677465 |
T |
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