View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_high_6 (Length: 353)
Name: NF8995_1D_high_6
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 30995561 - 30995225
Alignment:
| Q |
6 |
acctatactatcatttgcagcaacagatccaacactaacttcactagagttcccatattttgttaggacaacacagagtgatctgaatcaaatggctgct |
105 |
Q |
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| T |
30995561 |
acctatactatcatttgcagcaacagatccaacactaacttcactagagttcccatattttgttaggacaacacagagtgatctgaatcaaatggctgct |
30995462 |
T |
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| Q |
106 |
gtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaagaaatgggatagctgcattaggtgataagc |
205 |
Q |
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| T |
30995461 |
gtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaagaaatgggatagctgcattaggtgataagc |
30995362 |
T |
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| Q |
206 |
tagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaataaacaatgctttatttaaagtagctttgat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
30995361 |
tagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaataaacaatgcattatttaaggtagctttgat |
30995262 |
T |
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| Q |
306 |
ggagtctagagtaattgtccttcatgtaacccttcat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30995261 |
ggagtctagagtaattgtccttcatgtaacccttcat |
30995225 |
T |
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