View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_low_1 (Length: 549)
Name: NF8995_1D_low_1
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 45173511 - 45173959
Alignment:
| Q |
1 |
aataattttttcattcaattaatcgaagaactatccttcaggttattttggatcaagtagcaagaaattgtgtagatattgcaaccgacaaaattggatg |
100 |
Q |
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| T |
45173511 |
aataattttttcattcaattaatcgaagaactatctttcaggttattttggatcaagtagcaagaaattgtgtagatattacaaccgacaaaattggatg |
45173610 |
T |
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| Q |
101 |
ttcgattattcaaaaatgccttagccttgttgagggaagtgtcaaaagcttgctagtcacagaaattatctcaaatgctatgattctagcagaagatcca |
200 |
Q |
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| T |
45173611 |
ttcgattattcaaaaatgccttagccttgttgagggaagtgtcaaaagcttgctagtcacagaaattatctcaaatgctatgattctagcagaagatcca |
45173710 |
T |
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| Q |
201 |
tatgggtttaattctacactcttgaactgatagttacannnnnnnnnnnnnnnnngcattccacatttgaaagtgtattgatatgatatctcacatactt |
300 |
Q |
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| T |
45173711 |
tatgggtttaattctacactcttgaactgatagttacattttattttttatttttgcattccacatttgaaagtgtattgatatgatatctcacatac-t |
45173809 |
T |
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| Q |
301 |
ttacacttgcttaaacagttaaacttactagtagttatttatgttacaaatttcacatagactaagaaacgtgctaccttaaacttaatcttaatataag |
400 |
Q |
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| T |
45173810 |
ttacacttgcttaaacagttaaacttactagtaattatttatgttacaaatttcacatagactaagaaacgtgctaccttaaacttaatcttaatataag |
45173909 |
T |
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| Q |
401 |
aggttcaacttaatattaatcataatcttaatagaagatcattgccttaa |
450 |
Q |
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| T |
45173910 |
aggttcaacttaatattaatcataatcttaatagaagatcattgccttaa |
45173959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 478 - 549
Target Start/End: Original strand, 45173956 - 45174027
Alignment:
| Q |
478 |
ttaagtttaagcaagtttaaaaaacttgtattaagacatgataagtcattacttaccactgaaagattgagt |
549 |
Q |
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| T |
45173956 |
ttaagtttaagcaagtttaaaaaaattgtattaagacatgataagtcattacttaccactgaaagattgagt |
45174027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 48417227 - 48417140
Alignment:
| Q |
37 |
ttcaggttattttggatcaagtagcaagaaattgtgtagatattgcaaccgacaaaattggatgttcgattattcaaaaatgccttag |
124 |
Q |
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| T |
48417227 |
ttcagattatcttggatgaagtagcaagaaattgtgttgatatttcaacaaacaaagttggaacttcggttattcaaaaatgccttag |
48417140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 48417101 - 48417038
Alignment:
| Q |
163 |
aaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaa |
226 |
Q |
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| T |
48417101 |
aaatcatctcgaatgctatgatcctagcagaagatcaatatgggtttgattctacacttttgaa |
48417038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 48416881 - 48416813
Alignment:
| Q |
427 |
cttaatagaaga-tcattgccttaaacttgtcctttcataagcaaataagcattaagtttaagcaagttt |
495 |
Q |
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| T |
48416881 |
cttaatagaagagtcattgccttatacttatcttttgataagcaaataagcatgaa-ttcaagcaagttt |
48416813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 731255 - 731350
Alignment:
| Q |
27 |
agaactatccttcaggttattttggatcaagtagcaagaaattgtgtagatattgcaaccgacaaaattggatgttcgattattcaaaaatgcctt |
122 |
Q |
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| T |
731255 |
agaactttctttcagattatcttagatgaagttgcaagaaactgtgttgatattgcaactgacaaaattggatgttcggctgttaaaaaatgcctt |
731350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 731394 - 731457
Alignment:
| Q |
163 |
aaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaa |
226 |
Q |
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|||| ||||||||||||||||| ||| |||| |||||||| |||||| ||| |||||||||||| |
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| T |
731394 |
aaatcatctcaaatgctatgatcctatcagaggatccatacgggtttgattttacactcttgaa |
731457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 737947 - 738012
Alignment:
| Q |
163 |
aaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaact |
228 |
Q |
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|||| ||||||||||||||| | |||||||||||||||| || ||| |||| |||||||| |||| |
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| T |
737947 |
aaatcatctcaaatgctatggtcctagcagaagatccattcggatttgattccacactcttcaact |
738012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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