View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8995_1D_low_10 (Length: 338)

Name: NF8995_1D_low_10
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8995_1D_low_10
NF8995_1D_low_10
[»] chr4 (5 HSPs)
chr4 (4-316)||(33730631-33730943)
chr4 (4-316)||(11035706-11036018)
chr4 (5-57)||(42574969-42575021)
chr4 (6-57)||(5527321-5527372)
chr4 (4-57)||(3731338-3731391)
[»] chr1 (4 HSPs)
chr1 (8-316)||(24161681-24161989)
chr1 (4-53)||(29697586-29697635)
chr1 (4-57)||(44506262-44506315)
chr1 (5-56)||(20131847-20131898)
[»] chr5 (3 HSPs)
chr5 (4-316)||(42773165-42773481)
chr5 (7-57)||(28257232-28257282)
chr5 (208-255)||(22305383-22305430)
[»] chr2 (3 HSPs)
chr2 (4-132)||(27340287-27340415)
chr2 (4-126)||(19900355-19900477)
chr2 (250-316)||(13595220-13595286)
[»] scaffold0086 (2 HSPs)
scaffold0086 (7-120)||(49332-49445)
scaffold0086 (193-254)||(49271-49332)
[»] chr8 (3 HSPs)
chr8 (4-99)||(23637295-23637390)
chr8 (4-97)||(23637428-23637521)
chr8 (5-57)||(24447164-24447216)
[»] scaffold0077 (1 HSPs)
scaffold0077 (200-273)||(43770-43843)
[»] scaffold0003 (2 HSPs)
scaffold0003 (200-255)||(200829-200884)
scaffold0003 (208-273)||(194153-194218)
[»] chr7 (2 HSPs)
chr7 (4-57)||(20654299-20654352)
chr7 (5-57)||(20615593-20615645)
[»] chr6 (1 HSPs)
chr6 (4-57)||(19708603-19708656)
[»] chr3 (3 HSPs)
chr3 (4-57)||(51138175-51138228)
chr3 (4-57)||(28098270-28098323)
chr3 (4-44)||(35369933-35369973)
[»] scaffold0149 (1 HSPs)
scaffold0149 (200-255)||(12664-12719)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 33730943 - 33730631
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatca 103  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33730943 caatttttgcacatcatcatttgtaagtgtaattatggctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatca 33730844  T
Q  104 ataagagtttgtattgattgttctccttcccatggtaatgcaatttgatgaggtatcctcaccatagcattgagtttggtaggttcaacactgtcaccaa 203  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33730843 ataagagtttgtattgactgttctccttcccatggtaatgcaatttgatgaggtatcctcaccatagcattgagtttggtaggttcaacactgtcaccaa 33730744  T
Q  204 ttcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggaccttggtattagcctacaaatttgacttaataat 303  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||| |||||||    
T  33730743 ttcgcataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggaccttgatattagcccataaattagacctaataat 33730644  T
Q  304 acatgcagatatc 316  Q
    |||||||||||||    
T  33730643 acatgcagatatc 33730631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 11035706 - 11036018
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatca 103  Q
    ||||||||  ||||| ||||||||| |||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  11035706 caatttttaaacatcgtcatttgtaggtgtaattatggctcgttcgaccatatatgatgcatctcatccatgcaaatctaattgtggaaaaatatgatca 11035805  T
Q  104 ataagagtttgtattgattgttctccttcccatggtaatgcaatttgatgaggtatcctcaccatagcattgagtttggtaggttcaacactgtcaccaa 203  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  11035806 ataagagtttgtattgactgttctccttcccatgggaatgcaatttgaggaggtatcctcaccatatcattgggtttggtaggttcaacactatcaccaa 11035905  T
Q  204 ttcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggaccttggtattagcctacaaatttgacttaataat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||  || ||||||||    
T  11035906 ttcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtaccaaatgtagaaccttggtattagcccacaaataagatttaataat 11036005  T
Q  304 acatgcagatatc 316  Q
    |||||||||||||    
T  11036006 acatgcagatatc 11036018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 42574969 - 42575021
Alignment:
Q  5 aatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    |||||||| |||||||||||| || |||||||||| |||||||||||||||||    
T  42574969 aatttttgaacatcatcatttataggtgtaattatggctctttcgaccatata 42575021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 5527372 - 5527321
Alignment:
Q  6 atttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||| ||||||||||||||| |||||||||| |||||||| ||||||||    
T  5527372 atttttgaacatcatcatttgtaggtgtaattatggctctttcaaccatata 5527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 3731391 - 3731338
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||||| ||||||||||| ||| ||||||||||  ||||||| ||||||||    
T  3731391 caatttttgaacatcatcattcgtaggtgtaattatgactctttcaaccatata 3731338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 24161681 - 24161989
Alignment:
Q  8 ttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatcaataa 107  Q
    ||||| |||||||||||||||  ||||||||| |||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  24161681 ttttgaacatcatcatttgtagatgtaattatggctctttcgatcgtatacggtgcatcccatccatgcaaatataattgtggaaaaatatgatcaataa 24161780  T
Q  108 gagtttgtattgattgttctccttcccatggtaatgcaatttgatgaggtatcctcaccatagcattgagtttggtaggttcaacactgtcaccaattca 207  Q
    ||||||||||||| | |||  ||||||||||||||||||||||| |||| ||||| |||||| ||||| |||| |||||||||||||||||||||||||     
T  24161781 gagtttgtattgacttttcggcttcccatggtaatgcaatttgaggaggcatccttaccatatcattgggtttagtaggttcaacactgtcaccaattcg 24161880  T
Q  208 cataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggaccttggtattagcctacaaatttgacttaataatacat 307  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||  ||| |||||||||||    
T  24161881 cataataaattgtgcaaattcatgatcattcattgatcgcatattttataccatatgtaggaccttggtattagcccacaaataagacctaataatacat 24161980  T
Q  308 gcagatatc 316  Q
    ||| |||||    
T  24161981 gcaaatatc 24161989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 29697586 - 29697635
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgacca 53  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  29697586 caatttttgaacatcatcatttgtaggtgtaattatggctctttcgacca 29697635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 44506315 - 44506262
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||||  ||||||||||||||| |||||||||| |||||||| ||||||||    
T  44506315 caattttttaacatcatcatttgtaggtgtaattatggctctttcaaccatata 44506262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 20131847 - 20131898
Alignment:
Q  5 aatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatat 56  Q
    |||||||| |||||  |||||||| |||||||||| ||||||||||||||||    
T  20131847 aatttttgaacatccacatttgtaggtgtaattatggctctttcgaccatat 20131898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 42773165 - 42773481
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctcttt----cgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatg 99  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||     ||||||||| |||||||| |||| |||||||| ||||||||||||||||||    
T  42773165 caatttttgaacatcatcatttgtaggtgtaattatggctattttgacagaccatatatgatgcatctcatctatgcaaatctaattgtggaaaaatatg 42773264  T
Q  100 atcaataagagtttgtattgattgttctccttcccatggtaatgcaatttgatgaggtatcctcaccatagcattgagtttggtaggttcaacactgtca 199  Q
    |||||||||||||||||||||  ||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  42773265 atcaataagagtttgtattgaccgttatccttcccatggtaacgcaatttgaggaggtatcctcaccatatcattgggtttggtaggttcaacaccgtca 42773364  T
Q  200 ccaattcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggaccttggtattagcctacaaatttgacttaa 299  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||  ||| | |    
T  42773365 ccaattcacataagaaattgtgcaaatttcggatcattcattgatagcatattttgtactaaatgtatgaccttggtattagcccacaaataagacctga 42773464  T
Q  300 taatacatgcagatatc 316  Q
    ||||||||||| |||||    
T  42773465 taatacatgcaaatatc 42773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 28257232 - 28257282
Alignment:
Q  7 tttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  28257232 tttttgaacatcatcatttgtaggtgtaattatggctctttcgaccatata 28257282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 22305383 - 22305430
Alignment:
Q  208 cataagaaattgtgcaaattcaggatcattcattgatcgcatattttg 255  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||    
T  22305383 cataagaaattctgcaaattcatgatcatgcattgatcgcatattttg 22305430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 27340415 - 27340287
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatca 103  Q
    ||||||||| | ||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27340415 caatttttgaaaatcatcatttgcaggtgtaattatggctcttttgaccatatacgatgcatcccatccatgcaaatctaattatggaaaaatatgatca 27340316  T
Q  104 ataagagtttgtattgattgttctccttc 132  Q
    |||||||||||||||||||||||||||||    
T  27340315 ataagagtttgtattgattgttctccttc 27340287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 19900355 - 19900477
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatca 103  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||    
T  19900355 caatttttgaacatcatcatttgtaggtgtaattatggctctttcgaccatatacaatgcatctcatccattcaaatctaattgtggaaaaatatgatca 19900454  T
Q  104 ataagagtttgtattgattgttc 126  Q
    ||||||||||| ||||| |||||    
T  19900455 ataagagtttgcattgactgttc 19900477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 13595220 - 13595286
Alignment:
Q  250 attttgtactaaatgtaggaccttggtattagcctacaaatttgacttaataatacatgcagatatc 316  Q
    ||||||||| |||||||||||||||||||||||| ||||||  ||| ||||||||||| || |||||    
T  13595220 attttgtaccaaatgtaggaccttggtattagcccacaaataagacctaataatacatacatatatc 13595286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 49445 - 49332
Alignment:
Q  7 tttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatgatcaata 106  Q
    |||||| |||| || ||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  49445 tttttgaacattataatttgtaggtgtaattatggctctttcgactatatacgatgcattccatccatgcaaatcaaattgtggaaaaatatgatcaata 49346  T
Q  107 agagtttgtattga 120  Q
    ||||||||||||||    
T  49345 agagtttgtattga 49332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 49332 - 49271
Alignment:
Q  193 actgtcaccaattcacataagaaattgtgcaaattcaggatcattcattgatcgcatatttt 254  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  49332 actgtcaccaattcgaataagaaattgtgcaaattcaggatcattcattgatctcatatttt 49271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 23637295 - 23637390
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaatatg 99  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  23637295 caatttttgaacatcatcatttgtaggtgtaattatggctctttcgaccatatatgatgcatcccatccatgcaaatctaattgtggaaaaatatg 23637390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 23637521 - 23637428
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatatacgatgcatcccatccatgcaaatttaattgtggaaaaata 97  Q
    ||||||||| ||||||||||||||| || || |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  23637521 caatttttgaacatcatcatttgtaggtttagttatggctctttcgatcatatacgatgcatcccatccatgcaaatctaattgtggaaaaata 23637428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 24447216 - 24447164
Alignment:
Q  5 aatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    |||||||  ||||||||||||||| |||||||||| ||||||  |||||||||    
T  24447216 aattttttaacatcatcatttgtaggtgtaattatggctcttaagaccatata 24447164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 43770 - 43843
Alignment:
Q  200 ccaattcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggacctt 273  Q
    ||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||   || ||||||||||||    
T  43770 ccaattcgcataagaaattctgcaaattcatgatcatgcattgatcgcatattttggcgtagatgtaggacctt 43843  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 200829 - 200884
Alignment:
Q  200 ccaattcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttg 255  Q
    ||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||    
T  200829 ccaattcgcataagaaattctgcaaattcatgatcatgcattgatcgcatattttg 200884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 194153 - 194218
Alignment:
Q  208 cataagaaattgtgcaaattcaggatcattcattgatcgcatattttgtactaaatgtaggacctt 273  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||    ||||||||||||||    
T  194153 cataagaaattctgcaaattcatgatcatgcattgatcgcatattttggcgcaaatgtaggacctt 194218  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 20654299 - 20654352
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||    
T  20654299 caatttttgaacatcatcatttgtaggtgtaattatggctctttcaaccatata 20654352  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20615593 - 20615645
Alignment:
Q  5 aatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    |||| ||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  20615593 aattattgaacatcatcatttgtaagtgtaattatggctctttcaaccatata 20615645  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 19708603 - 19708656
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||||  ||||||||||||||| |||||||||| |||||||||||||||||    
T  19708603 caatttttaaacatcatcatttgtaggtgtaattatggctctttcgaccatata 19708656  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 51138175 - 51138228
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||||  ||||||||||||||| |||||||||| |||||||||||||||||    
T  51138175 caattttttaacatcatcatttgtaggtgtaattatggctctttcgaccatata 51138228  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 28098323 - 28098270
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctctttcgaccatata 57  Q
    ||||||||| ||||||  ||||||| |||||||||| |||||||||||||||||    
T  28098323 caatttttgaacatcaagatttgtaggtgtaattatggctctttcgaccatata 28098270  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 35369973 - 35369933
Alignment:
Q  4 caatttttgcacatcatcatttgtaagtgtaattatagctc 44  Q
    ||||||||| ||||||||||||||| |||||||||| ||||    
T  35369973 caatttttgaacatcatcatttgtaggtgtaattatggctc 35369933  T

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Target: scaffold0149 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 12719 - 12664
Alignment:
Q  200 ccaattcacataagaaattgtgcaaattcaggatcattcattgatcgcatattttg 255  Q
    ||||||| ||||||||| | |||||||||| |||||| ||||||||||||||||||    
T  12719 ccaattcgcataagaaaatatgcaaattcatgatcatgcattgatcgcatattttg 12664  T

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