View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8995_1D_low_12 (Length: 330)
Name: NF8995_1D_low_12
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_12 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0003 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 24493525 - 24493836
Alignment:
| Q |
19 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagtatttgttggtcacaaaacatccttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493525 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagtatttgttggtcacaaaacatccttta |
24493624 |
T |
|
| Q |
119 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493625 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggtgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
24493724 |
T |
|
| Q |
219 |
cttgggatctagttccgaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493725 |
cttgggatctagttcctaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
24493824 |
T |
|
| Q |
319 |
ggcacgtctagt |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24493825 |
ggcacgtctagt |
24493836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 119 - 330
Target Start/End: Original strand, 92975 - 93186
Alignment:
| Q |
119 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92975 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggagtgccgccatggcatcagaatttaatgcattgatgcaacagggga |
93074 |
T |
|
| Q |
219 |
cttgggatctagttccgaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgatagatacaa |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
93075 |
cttgggatctagttccaaaaaacacagcgtctaatctcattggatgtaagtgggtgtttcgggtgaaacgtcggccagacggctccattgacagatacaa |
93174 |
T |
|
| Q |
319 |
ggcacgtctagt |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
93175 |
ggcacgtctagt |
93186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 92890 - 92951
Alignment:
| Q |
19 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagc |
80 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92890 |
atcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataacatacacaagc |
92951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 92945 - 92976
Alignment:
| Q |
147 |
cacaagcaatggcttcttctgaatggcgtgcc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
92945 |
cacaagcaatggcttcttctgaatggcgtgcc |
92976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University