View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_low_13 (Length: 303)
Name: NF8995_1D_low_13
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 38814608 - 38814893
Alignment:
| Q |
18 |
acatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctcatcaggttgaatgtctagaagtactggttcttccctgacaa |
117 |
Q |
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| T |
38814608 |
acatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctcatcaggttgaatgtctagaagtactggttcttccctgacaa |
38814707 |
T |
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| Q |
118 |
ttaatggagtaaatttacaaggcatgagaaactcattaaaacaaacaactactatcatcccataaggtgatgttggctaattggatcaaacaatcaatta |
217 |
Q |
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| T |
38814708 |
ttaatggagtaaatttacaaggcatgagaaactcattaaaacaaacaactactatcatcccataaggtgatgttggctaattggatcaaacaatcaatta |
38814807 |
T |
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| Q |
218 |
gggttaataaatagccaaatattcaatgaatttcacattggaactaaacacatcttatcattcaacttaaaaagcatatgcctgga |
303 |
Q |
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| T |
38814808 |
gggttaataaatagccaaatattcaatgaatttcacattggaactaaacacatcttatcatccaacttaaaaagcatatgcctgga |
38814893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 38821066 - 38821160
Alignment:
| Q |
18 |
acatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctcatcaggttgaatgtctagaagtactggttcttccct |
112 |
Q |
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| T |
38821066 |
acatcaattaactgtgcctccttcgagaagttgggatcttgaagtttcacatgcagctcatcaggttgaatgtcttgaaatacagattcttccct |
38821160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 38821252 - 38821358
Alignment:
| Q |
181 |
aaggtgatgttggctaattggatcaaacaatcaattagggttaa--taaatagccaaatattcaatgaatttcacattggaactaaacacatcttatcat |
278 |
Q |
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| T |
38821252 |
aaggtggtgttggctaattagatcaaacaatcaataaggatttacgaaaataaccaaatattcaataaatttcccatccgaaagaaacacattttaccat |
38821351 |
T |
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| Q |
279 |
tcaactt |
285 |
Q |
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| T |
38821352 |
ccaactt |
38821358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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