View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_low_15 (Length: 294)
Name: NF8995_1D_low_15
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 89 - 276
Target Start/End: Original strand, 1586573 - 1586760
Alignment:
| Q |
89 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
188 |
Q |
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| T |
1586573 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1586672 |
T |
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| Q |
189 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatg |
276 |
Q |
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| T |
1586673 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatg |
1586760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 1580463 - 1580648
Alignment:
| Q |
89 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
188 |
Q |
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| T |
1580463 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1580562 |
T |
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| Q |
189 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa |
274 |
Q |
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| T |
1580563 |
gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa |
1580648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 89 - 274
Target Start/End: Complemental strand, 1604352 - 1604167
Alignment:
| Q |
89 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
188 |
Q |
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| T |
1604352 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1604253 |
T |
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| Q |
189 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa |
274 |
Q |
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| T |
1604252 |
gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa |
1604167 |
T |
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