View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8995_1D_low_16 (Length: 291)
Name: NF8995_1D_low_16
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 272
Target Start/End: Complemental strand, 37202830 - 37202582
Alignment:
| Q |
24 |
gaatttgctaataatatatatagttttccatttccaggcacaagaattccttgaaactcgttctgaacaacacaactaaaaacgaaaaccatagcaattg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37202830 |
gaatttgctaataatatatatagttttccatttccaggcacaagaattccttgaaactcgttctgaacaacacaactaaaaacgaaaaccatagcaattg |
37202731 |
T |
|
| Q |
124 |
attcaattttcccgctaaatttcaagaagnnnnnnnnnnnnnnnntgtaaacaaatttgcatgcctgtttatactgcaactcaattgtataggaaagtag |
223 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37202730 |
attcaattttcccgctaaatttcaagaagaaaagaaaaacaaaaatgtaaacaaatttgcatgcctgtttatactgcaactcaattgtataggaaagtag |
37202631 |
T |
|
| Q |
224 |
aatcgggcttatttctcccgtctccggtcgcgaaacggagacaatactg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37202630 |
aatcgggcttatttctcccgtctccggtcgcgaaacggagacaatactg |
37202582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University