View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_low_2 (Length: 502)
Name: NF8995_1D_low_2
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_2 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 22 - 502
Target Start/End: Original strand, 24493954 - 24494434
Alignment:
| Q |
22 |
tcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccgggatttcatcatccagattaccctaat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493954 |
tcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaattgtatacatgcaacaaccaccgggatttcatcatccagattaccctaat |
24494053 |
T |
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| Q |
122 |
catgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtttgtca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494054 |
catgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtttgtca |
24494153 |
T |
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| Q |
222 |
attccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24494154 |
attccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattactggcaacaacaa |
24494253 |
T |
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| Q |
322 |
ccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctact |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494254 |
ccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctact |
24494353 |
T |
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| Q |
422 |
actcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtc |
502 |
Q |
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| T |
24494354 |
actcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtc |
24494434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 22 - 502
Target Start/End: Original strand, 93304 - 93784
Alignment:
| Q |
22 |
tcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccgggatttcatcatccagattaccctaat |
121 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
93304 |
tcaccagttggatgtaaacaatgtgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccaggatttcatcatctagattaccctaat |
93403 |
T |
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| Q |
122 |
catgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtttgtca |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
93404 |
catgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggttcaacaccttacattctttcttactctcctatggatttgtca |
93503 |
T |
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| Q |
222 |
attccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaa |
321 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93504 |
attcaaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaa |
93603 |
T |
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| Q |
322 |
ccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctact |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93604 |
ccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctact |
93703 |
T |
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| Q |
422 |
actcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtc |
502 |
Q |
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| T |
93704 |
actcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtc |
93784 |
T |
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