View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8995_1D_low_20 (Length: 259)

Name: NF8995_1D_low_20
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8995_1D_low_20
NF8995_1D_low_20
[»] chr5 (4 HSPs)
chr5 (131-258)||(17431067-17431193)
chr5 (131-254)||(41612259-41612381)
chr5 (48-126)||(40045274-40045354)
chr5 (185-258)||(4421382-4421454)
[»] chr2 (6 HSPs)
chr2 (131-258)||(40109905-40110031)
chr2 (131-258)||(19469346-19469472)
chr2 (134-258)||(11580002-11580125)
chr2 (131-258)||(18845092-18845218)
chr2 (157-256)||(12562579-12562677)
chr2 (191-232)||(7300259-7300299)
[»] chr7 (3 HSPs)
chr7 (131-253)||(35552843-35552964)
chr7 (131-256)||(19914242-19914366)
chr7 (191-248)||(39474540-39474596)
[»] chr6 (2 HSPs)
chr6 (134-258)||(25349778-25349901)
chr6 (134-243)||(26513294-26513402)
[»] chr3 (4 HSPs)
chr3 (131-257)||(53940874-53941000)
chr3 (143-254)||(34294249-34294359)
chr3 (169-258)||(34434315-34434403)
chr3 (169-232)||(31770164-31770226)
[»] chr8 (5 HSPs)
chr8 (131-258)||(25192644-25192770)
chr8 (146-258)||(31639971-31640083)
chr8 (139-258)||(25879070-25879188)
chr8 (132-258)||(39432178-39432303)
chr8 (143-257)||(42579916-42580029)
[»] chr4 (8 HSPs)
chr4 (26-126)||(45991105-45991207)
chr4 (161-258)||(55479795-55479892)
chr4 (192-258)||(9321795-9321860)
chr4 (192-258)||(9376274-9376339)
chr4 (209-258)||(32384873-32384922)
chr4 (191-248)||(34104903-34104959)
chr4 (181-249)||(12225795-12225862)
chr4 (169-250)||(19119640-19119720)
[»] chr1 (2 HSPs)
chr1 (150-257)||(52691093-52691199)
chr1 (143-254)||(44762091-44762201)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 17431193 - 17431067
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17431193 ttccattctttatggtggttagaggctaataatgccttgtttgtgcatgacactcagatgtggtggtcgga-ccctatgttatgtttgggtatcgactga 17431095  T
Q  231 ccgtaattttgtaaatattgtttgactg 258  Q
    ||||||||||||||||||||||||||||    
T  17431094 ccgtaattttgtaaatattgtttgactg 17431067  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 41612381 - 41612259
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  41612381 ttccattctttatggtggttacaggctaataatgccttgtttgtgcacggcactcaaatgtggtggtcgga-ccctatgttatgtctgggtatcgactga 41612283  T
Q  231 ccgtaattttgtaaatattgtttg 254  Q
    ||||||||||||||||||||||||    
T  41612282 ccgtaattttgtaaatattgtttg 41612259  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 40045354 - 40045274
Alignment:
Q  48 acacctttgtattttctctct--gtgttccaagttttggtggttcttccacgttcttggctaataaattttgcagattcaa 126  Q
    |||||||| |||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  40045354 acacctttctattttatctctttgtgttccaagttttggtggttcttccaccttcttggctaataaattttgccgattcaa 40045274  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 4421454 - 4421382
Alignment:
Q  185 cagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 258  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||  ||   ||||||||||||| ||||||    
T  4421454 cagatgtggtggtcgaatccct-tgttatgtttgggtatcgactgactatagacttgtaaatattgtatgactg 4421382  T

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Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 40110031 - 40109905
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  40110031 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatgacacttagatgtggtggtcgga-ccctatgttatgtctgggtatcgactga 40109933  T
Q  231 ccgtaattttgtaaatattgtttgactg 258  Q
    |||||||||| |||||||||||||||||    
T  40109932 ccgtaattttataaatattgtttgactg 40109905  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 19469346 - 19469472
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| |||||| ||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||  |||||||||||| || |||||||||||    
T  19469346 ttccattctttatgatggctacaagctaataatgccttgtttgtgcatgacactcacatgtggtggtcgga-tcctatgttatgtctgagtatcgactga 19469444  T
Q  231 ccgtaattttgtaaatattgtttgactg 258  Q
    ||||| ||||||||||||||||||||||    
T  19469445 ccgtacttttgtaaatattgtttgactg 19469472  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 11580002 - 11580125
Alignment:
Q  134 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 233  Q
    |||| ||| |||||| || |||||||||| || | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |    
T  11580002 cattctttgtggtggctaaaggctaataacgcctcgtttgtgcatgacactcagatgtggtggtcgaaccc-tatgttatgtttgggtatcgactgactg 11580100  T
Q  234 taattttgtaaatattgtttgactg 258  Q
     | ||||||||||||||||||||||    
T  11580101 aacttttgtaaatattgtttgactg 11580125  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 18845092 - 18845218
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| |||||||| | | ||| |||||||||| |||||||||||||  ||||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  18845092 ttccattctttatggtagctgcagactaataatgccttgtttgtgcatggtactcagatgtgatggtcggaccc-tatgttatgtctaggtatcgactga 18845190  T
Q  231 ccgtaattttgtaaatattgtttgactg 258  Q
    ||||| ||||||||||||||||||||||    
T  18845191 ccgtacttttgtaaatattgtttgactg 18845218  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 12562677 - 12562579
Alignment:
Q  157 taataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgac 256  Q
    ||||||||| | |||| ||||||| ||| |||||||||||| ||| || |||||||| | |||||||||||||||| || || |||||||||||||||||    
T  12562677 taataatgcctggtttttgcatgagactgagatgtggtggttggatcc-tatgttatatctgggtatcgactgaccatagttgtgtaaatattgtttgac 12562579  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 7300299 - 7300259
Alignment:
Q  191 tggtggtcggacccctatgttatgtttgggtatcgactgacc 232  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  7300299 tggtggtcggaccctt-tgttatgtttgggtatcgactgacc 7300259  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 35552964 - 35552843
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  35552964 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagatgtggtggtcgga-ccctatgttatgtctgggtatcgactga 35552866  T
Q  231 ccgtaattttgtaaatattgttt 253  Q
    | |||||||||||||||||||||    
T  35552865 ctgtaattttgtaaatattgttt 35552843  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 19914366 - 19914242
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||  || |||||||||||    
T  19914366 ttccattctttatggtggttacaggttaataatgccttgtttgtgcatgacactcagatgtggtggtcgga-tcttatgttatgactgagtatcgactga 19914268  T
Q  231 ccgtaattttgtaaatattgtttgac 256  Q
    | ||||||||||||||||||||||||    
T  19914267 ctgtaattttgtaaatattgtttgac 19914242  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 39474540 - 39474596
Alignment:
Q  191 tggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatat 248  Q
    |||||||||||||| | ||||||| |||||||| ||||||||||| ||||||| ||||    
T  39474540 tggtggtcggaccctt-tgttatgcttgggtattgactgaccgtatttttgtacatat 39474596  T

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Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 25349901 - 25349778
Alignment:
Q  134 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 233  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||     
T  25349901 cattctttatggtggttacatgctaataatgccttgtttgtgcatggcactcagatgtggtggtcgga-ccctatgttatgtctgggtatcgactgacca 25349803  T
Q  234 taattttgtaaatattgtttgactg 258  Q
    |||||||||||||||||||||||||    
T  25349802 taattttgtaaatattgtttgactg 25349778  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 26513402 - 26513294
Alignment:
Q  134 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 233  Q
    |||| ||| ||||||||| ||||||||||||| | |||| |||| | ||| ||||||||||||||||| ||| ||||||| | |||||||||||||||||    
T  26513402 cattctttgtggtggttaaaggctaataatgcctcgtttatgcacggcacacagatgtggtggtcgga-cccaatgttatttctgggtatcgactgaccg 26513304  T
Q  234 taattttgta 243  Q
    || |||||||    
T  26513303 tacttttgta 26513294  T

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Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 53941000 - 53940874
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  53941000 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactga 53940902  T
Q  231 ccgtaa-ttttgtaaatattgtttgact 257  Q
    |||||| |||||||||||||||||||||    
T  53940901 ccgtaatttttgtaaatattgtttgact 53940874  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 34294249 - 34294359
Alignment:
Q  143 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 242  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||| |||||||||||||||||||||| | | || |||    
T  34294249 tggtggttaaaggctaataatgccttgtttgtgcatggcactcagatatggtggtc-gaaccctatcttatgtttgggtatcgactgactgaacttgtgt 34294347  T
Q  243 aaatattgtttg 254  Q
    ||||||| ||||    
T  34294348 aaatattttttg 34294359  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 34434315 - 34434403
Alignment:
Q  169 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 258  Q
    ||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  34434315 gtttgtgcacgacactcagatgtggtggtcgaaccctt-tgttatgtttgggtatcgactgactgtagttttgtaaatattgtatgactg 34434403  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 31770164 - 31770226
Alignment:
Q  169 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgacc 232  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||| ||||||||| ||||||||||    
T  31770164 gtttgtgtatgacactcagagatggtggtcgga-ccctatgttgtgtttgggtttcgactgacc 31770226  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 25192770 - 25192644
Alignment:
Q  131 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 230  Q
    ||||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  25192770 ttccattatttatggtggctacaagctaataatgccttgtttgtgcatggcactcagatgtggtggtcgta-ccctatgttatgtctgggtatcgactga 25192672  T
Q  231 ccgtaattttgtaaatattgtttgactg 258  Q
    ||||| ||||||||||||||||||||||    
T  25192671 ccgtacttttgtaaatattgtttgactg 25192644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 31639971 - 31640083
Alignment:
Q  146 tggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaa-ttttgtaa 244  Q
    |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  31639971 tggttacaggttaataatgccttgtttgtgcatgacactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactgaccgtaatttttgtaa 31640069  T
Q  245 atattgtttgactg 258  Q
    ||||||||||||||    
T  31640070 atattgtttgactg 31640083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 25879188 - 25879070
Alignment:
Q  139 tttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaatt 238  Q
    ||||||||||||||||||||||||||  || ||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  25879188 tttatggtggttacaggctaataatgtcttctttgtgcatggtactcagatgtggtggtcgga-ccctatgttatgtatgggtatcgactaaccgtaatt 25879090  T
Q  239 ttgtaaatattgtttgactg 258  Q
    ||||||||||| ||||||||    
T  25879089 ttgtaaatattatttgactg 25879070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 39432303 - 39432178
Alignment:
Q  132 tccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgac 231  Q
    |||||| |||||||||| |||| ||||||||||  |||||||||||||| ||||||||||||| ||| ||||| |||||||||| |||||||||||||||    
T  39432303 tccattctttatggtggctacaagctaataatgtcttgtttgtgcatgatactcagatgtggtcgtcagaccc-tatgttatgtctgggtatcgactgac 39432205  T
Q  232 cgtaattttgtaaatattgtttgactg 258  Q
    | || ||||||||||||||||||||||    
T  39432204 catacttttgtaaatattgtttgactg 39432178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 42579916 - 42580029
Alignment:
Q  143 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 242  Q
    |||||| || ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||| ||| |||| |    
T  42579916 tggtggctaaaggctaataatgcctcgtttgtgcatgacactcagatgtggtggtc-gaaccctatgttatgtttggatatcgattgactgtacttttat 42580014  T
Q  243 aaatattgtttgact 257  Q
    |||||||||||||||    
T  42580015 aaatattgtttgact 42580029  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 45991207 - 45991105
Alignment:
Q  26 acattggtgcacgttgtattcgacacctttgtattttctctct--gtgttccaagttttggtggttcttccacgttcttggctaataaattttgcagatt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  45991207 acattggtgcacgttgtattcgacacctttgtattttctctctttgtgttccaagttttggtggttcttccaccttcttggctaataaattttgccgatt 45991108  T
Q  124 caa 126  Q
    |||    
T  45991107 caa 45991105  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 55479892 - 55479795
Alignment:
Q  161 aatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaa-ttttgtaaatattgtttgactg 258  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  55479892 aatgccttgtttgtgcatgacactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactgaccgtaatttttgtaaatattgtttgactg 55479795  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 9321795 - 9321860
Alignment:
Q  192 ggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 258  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  9321795 ggtggtcggaccc-tatgttatgtttgagtatcgactgaccgtacttttgtaaatattgtctgactg 9321860  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 9376274 - 9376339
Alignment:
Q  192 ggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 258  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  9376274 ggtggtcggaccc-tatgttatgtttgagtatcgactgaccgtacttttgtaaatattgtctgactg 9376339  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 32384873 - 32384922
Alignment:
Q  209 gttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 258  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  32384873 gttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactg 32384922  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 34104959 - 34104903
Alignment:
Q  191 tggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatat 248  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  34104959 tggtggtcggaccctt-tgttatgtttgggtatcgactgaccgtatttttgtacatat 34104903  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 12225795 - 12225862
Alignment:
Q  181 cactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 249  Q
    |||| ||||||||||||||||||| ||| || | | |||||||||||||||| | ||||||||||||||    
T  12225795 cacttagatgtggtggtcggaccc-tatattttatctgggtatcgactgacctttattttgtaaatatt 12225862  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 19119720 - 19119640
Alignment:
Q  169 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattg 250  Q
    ||||||||| |||||| |||  |||||||| ||||  | |||||||| ||||||||||||||||||  ||| ||||||||||    
T  19119720 gtttgtgcacgacacttagagttggtggtcagaccttt-tgttatgtctgggtatcgactgaccgttgtttagtaaatattg 19119640  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 52691199 - 52691093
Alignment:
Q  150 tacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 249  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  52691199 tacaagctaataatgtcttgtttgtgcatgacactcagatgtggtggtcggaccc-tatgttatgtctgggtatcgactgaccgtaattttgtaaatatt 52691101  T
Q  250 gtttgact 257  Q
    ||||||||    
T  52691100 gtttgact 52691093  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 44762201 - 44762091
Alignment:
Q  143 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 242  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| | | || |||    
T  44762201 tggtggttaaaggctaataatgcattgtttgtgcatggcactcagatgtgctggtc-gaaccctatgttatgtttgggtatcgactgactgaacttgtgt 44762103  T
Q  243 aaatattgtttg 254  Q
    ||||||||||||    
T  44762102 aaatattgtttg 44762091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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