View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_low_4 (Length: 443)
Name: NF8995_1D_low_4
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0512 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 443
Target Start/End: Original strand, 45172526 - 45172954
Alignment:
| Q |
15 |
gacatcaacaccgtaatgggagttctttctttgtcgtataataatatcaatcgtagagaaaccggcagtactaatcatacttatatttacaatcaccctt |
114 |
Q |
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| T |
45172526 |
gacattaacaccgtaatgggaggtctttctttgtcgtataataataacaatcgtagagaaaccggcagtactaatcatacttatattgacaatcaccctt |
45172625 |
T |
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| Q |
115 |
caatgatgatgagagagttggtactttcaatggcaatggattggcgtggatgtcaatatctgcaggcgaagatcgagaagggcaacccggcagatgttga |
214 |
Q |
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| T |
45172626 |
caatgatgatgagagagttggtactttcaatggcaatggattggcgtggatgtcaatatctgcaggcgaagatcgagaagggcaacccggcagatgttga |
45172725 |
T |
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| Q |
215 |
gtttatcctctcaatcgtgaaggatcatgtacaccagctaatgacacacaacaacaactacttgattaaaaagatttttcaagcaaggagtggtgtcacc |
314 |
Q |
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| T |
45172726 |
gtttatcctctcaatcgtgaaggatcatgtacaccagctaatgacacacaacaacaactacttgattaaaaagatttttcaagcaaggagtggtgtcacc |
45172825 |
T |
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| Q |
315 |
ccggagcagatggaatctattgttttatcgattatctcggatgatcaaaagctgaaacatgtgtgcatggacaatcgcgggtatgttgtcaccataaggt |
414 |
Q |
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| T |
45172826 |
ccggagcagatggaatctattgttttatcgattatctcggatgatcaaaagctgaaacatgtgtgcatggacaatcgcgggtatgttgtcaccataaggt |
45172925 |
T |
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| Q |
415 |
tttaaattgtgtggtcatgatatttgatg |
443 |
Q |
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| T |
45172926 |
tttaaattgtgtggtcatgatatttgatg |
45172954 |
T |
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Back To:
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Target: scaffold0512 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 398
Target Start/End: Original strand, 2382 - 2507
Alignment:
| Q |
269 |
caactacttgattaaaaagatttttcaagcaaggagtggtgtcaccccggagcagatggaatctattgttttatcgattatctcggatgatcaaaagctg |
368 |
Q |
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| T |
2382 |
caactacttgattcaaaagatttttcaaccaagaagcggtgtcacgtgggagtagattgactctattgtttt----attatctaggatgatcaaaagctg |
2477 |
T |
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| Q |
369 |
aaacatgtgtgcatggacaatcgcgggtat |
398 |
Q |
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| T |
2478 |
atatatgtgtgtatggacaattacgggtat |
2507 |
T |
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