View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_1D_low_5 (Length: 413)
Name: NF8995_1D_low_5
Description: NF8995_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_1D_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 36 - 397
Target Start/End: Complemental strand, 22684799 - 22684437
Alignment:
| Q |
36 |
ttttgttttatttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctag |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684799 |
ttttgttttatttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctag |
22684700 |
T |
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| Q |
136 |
gctaagatgttatgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtcca |
235 |
Q |
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| T |
22684699 |
gctaagatgttatgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtcca |
22684600 |
T |
|
| Q |
236 |
tactattattactacctttgtgcgttgctctattgcacttacacttctgatg-aaagcgtctctggtgtctgacatggatacgacatcgatcaacacatg |
334 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||| |
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| T |
22684599 |
tactattattactacctttgtgcgttgctctgttgcacttacacttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatg |
22684500 |
T |
|
| Q |
335 |
tgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagt |
397 |
Q |
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| T |
22684499 |
tgattacgttcaattaactcatattttcaaatttttcacccgtgtcaatgtgtctgtgtcagt |
22684437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 22696082 - 22695870
Alignment:
| Q |
48 |
tataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtta |
147 |
Q |
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| T |
22696082 |
tataggttgtgactcctctggcaaaatatgccttaacattattgcctattgcatcaagcatagaggaacttgtc---ccttctcctaggctaagatgtta |
22695986 |
T |
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| Q |
148 |
tgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattac |
247 |
Q |
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| T |
22695985 |
tcctatgtctattctcatcagaacagctttagtggtttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattac |
22695887 |
T |
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| Q |
248 |
tacctttgtgcgttgct |
264 |
Q |
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| T |
22695886 |
tacctttgtgcattgct |
22695870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
| Q |
328 |
acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc |
380 |
Q |
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| T |
23423220 |
acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc |
23423271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 92594 - 92635
Alignment:
| Q |
1 |
gccactcgaagagtgcatttatctcgtcatgttgtttttgtt |
42 |
Q |
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| T |
92594 |
gccactcgaagagtgcatttatctcgtcatgttgtttttgtt |
92635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24493229 - 24493270
Alignment:
| Q |
1 |
gccactcgaagagtgcatttatctcgtcatgttgtttttgtt |
42 |
Q |
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| T |
24493229 |
gccactcgaagagtgcatttatctcgtcatgttgtttttgtt |
24493270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
| Q |
328 |
acacatgtgattacgttcaattaactcatattttcaaattttt |
370 |
Q |
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||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
10764084 |
acacatgcgattacgttcaattaattcattttttcaaattttt |
10764126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
| Q |
330 |
acatgtgattacgttcaattaactcatattttcaaattttt |
370 |
Q |
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| T |
14782856 |
acatgtgattacgttcaattaattcattttttcaaattttt |
14782896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
| Q |
330 |
acatgtgattacgttcaattaactcatattttcaaattttt |
370 |
Q |
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| T |
9198640 |
acatgtgattatgttcaattaattcattttttcaaattttt |
9198680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
| Q |
330 |
acatgtgattacgttcaattaactcatattttcaaatttttcacca |
375 |
Q |
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| T |
26456492 |
acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca |
26456448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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