View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_2D_low_1 (Length: 472)
Name: NF8995_2D_low_1
Description: NF8995_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_2D_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 7432785 - 7432332
Alignment:
| Q |
1 |
caaaccatgtcaaatttcatttcttgtcgacataaatctacattttacattctacacctatatgaaaggtgaattgcatgctagtatatagtgatcgacc |
100 |
Q |
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| T |
7432785 |
caaaccatgtcaaatttcatttcttgtcgacataaatctacattttacattctacacctatatgaaaagtgaattgcatgctagtatatagtgatcgacc |
7432686 |
T |
|
| Q |
101 |
aattatgataacctaaatattcttattaaattaatttaagaattgtactatttattgaactaggttgaattgattttctttatgcaacagaggaggatcc |
200 |
Q |
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| T |
7432685 |
aattatgataacctaaatatttttattaaattaatttaagaattgtactatttattgaactaggttgaattgattttctttatgcaacagaggaggatcc |
7432586 |
T |
|
| Q |
201 |
aagatgaaaaaatatatatctcaattggattgacacttcagtcgccggtcgccacgaaatacgatctctactaaccctaatattatcgaagagaagaaga |
300 |
Q |
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||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
7432585 |
aagatgaaaaaat--atatctcaactggattgacacttctgtcgccggtcgccacgaaatacaatctctactaaccctaatattaacgaagagaagaaga |
7432488 |
T |
|
| Q |
301 |
gaaaaaaggatcaataatttggaacaagaagcaaatctaataaaaatattagctatgaaaaaagattacatatgttacaattagttgaaaataaaccacc |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7432487 |
gaaaaaaggttcaataatttggaacaagaagcaaatctaataaaaagattaactatgaaaaaagattacatatgttacacttagttgaaaataaaccacc |
7432388 |
T |
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| Q |
401 |
aaccaattaaggtcaaacgaagtctaaatagtcgaatgattgtattagaacaccaa |
456 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7432387 |
aatcaattaaggtcaaatgaagtctaaatagtcgaatgattgtattagaacaccaa |
7432332 |
T |
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