View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_2D_low_3 (Length: 418)
Name: NF8995_2D_low_3
Description: NF8995_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_2D_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 14238938 - 14239319
Alignment:
| Q |
22 |
aaaagtacctcagaaagagctgcagcagctgctttacgaatgcttagaagtgaatcggaacaggccattcccattgtcttcagcaccacttcatcaatag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14238938 |
aaaagtacctcagaaagagctgcagcagctgctttacgaatgcttagaagtgaatcggaacaggccattcccattgtcttcagcaccacttcatcaatag |
14239037 |
T |
|
| Q |
122 |
cacctccaagtagagcagtcaaattagtaacaaacaaaagagctgcttttctcacaacagccttctcatccacacaccttctcctaagcatctcattgat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14239038 |
cacctccaagtagagcagtcaaattagtaacaaacaaaagagctgcttttctcacaacagccttctcatccacacaccttctcctaagcatctcattgat |
14239137 |
T |
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| Q |
222 |
tccctttcctcccacacccgcaacatttccatcaccaaaacccataaactctttcaaaaccacactagccttttcactacctgataaaaacccaacaacc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14239138 |
tccctttcctcccacacccgcaacatttccatcaccaaaacccataaactctttcaaaaccacactagccttttcactacctgataaaaacccaacaacc |
14239237 |
T |
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| Q |
322 |
tgcgccagagtcgacatcgctcgcccgcgaatcgtagcactaacatccgaacaacgcttcaccaatgcctccaaacaccaaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14239238 |
tgcgccagagtcgacatcgctcgcccgcgaatcgtagcactaacatccgaacaacgcttcaccaatgcctccaaacaccaaa |
14239319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 386
Target Start/End: Original strand, 45323072 - 45323429
Alignment:
| Q |
29 |
cctcagaaagagctgcagcagctgctttacgaatgcttagaagtgaatcggaacaggccattcccattgtcttcagcaccacttcatcaatagcacctcc |
128 |
Q |
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|||||||||||||||||||||| ||||| |||||||| | ||||||||||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||| |
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| T |
45323072 |
cctcagaaagagctgcagcagccgctttccgaatgctaacaagtgaatcggaacaagccatacccattgtctttagccccacttcatcagtagcacctcc |
45323171 |
T |
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| Q |
129 |
aagtagagcagtcaaattagtaacaaacaaaagagctgcttttctcacaacagccttctcatccacacaccttctcctaagcatctcattgattcccttt |
228 |
Q |
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||| ||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45323172 |
aagcagagcagtcaagttagtaacaagcaaaagagcagcttttctcacaatcgccttctcgtccacacaccttctcctaagcatctcattgattcccttt |
45323271 |
T |
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| Q |
229 |
cctcccacacccgcaacatttccatcaccaaaacccataaactctttcaaaaccacactagccttttcactacctgataaaaacccaacaacctgcgcca |
328 |
Q |
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||||||||| || ||||||| |||||| |||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||| |
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| T |
45323272 |
cctcccacatccacaacattcccatcatcaaagcccaaaaactctttcaaaaccacactagccttatcattacctgataaaaacctaagaacctgcgcca |
45323371 |
T |
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| Q |
329 |
gagtcgacatcgctcgcccgcgaatcgtagcactaacatccgaacaacgcttcaccaa |
386 |
Q |
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| ||| || || | | | |||| ||||||||| ||| ||||||||||||||||| |
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| T |
45323372 |
aactcggcaaagccttcgctctaatcatagcactaaaatcagaacaacgcttcaccaa |
45323429 |
T |
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