View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_high_14 (Length: 306)
Name: NF8995_high_14
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_high_14 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 12635449 - 12635715
Alignment:
| Q |
25 |
gtatgaaaaactta-tccaatttgaacaattcactttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattattaattgatagtat |
123 |
Q |
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| T |
12635449 |
gtatgaaaaacttactccaatttgaacaattctctttatagtcatagtgaagtactaattaatatctattattgacgaaaatattaataattgatattat |
12635548 |
T |
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| Q |
124 |
gcatgcatacataataaattatgatcaaattgaaatatcaattttcttaatttctca-tttacactttataatgtggtgaaatctttcaacttaccgggt |
222 |
Q |
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| T |
12635549 |
gcacgcatacataataaattatgatcaaattgaaatatcaattaccttaatttctcattttactctttataatatggtgaaatctttcaacttaccgggt |
12635648 |
T |
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| Q |
223 |
gaaacttggtggccatgtaacctaagcagtct-aatcccattgttgtgtcatctatatcttgaacct |
288 |
Q |
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| T |
12635649 |
gaaacttggtggccatgcaacctaagcagtctaaatcccattgttatgtcatctatatcttgaacct |
12635715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 37959268 - 37958993
Alignment:
| Q |
25 |
gtatgaaaaactta-tccaatttgaacaattcactttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattattaattgatagtat |
123 |
Q |
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| T |
37959268 |
gtatgaaaaacttactccaatttgaacaattcactttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattaataattggtattat |
37959169 |
T |
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| Q |
124 |
gcatgcatacataataaattatgatcaaatt--gaaatatcaattttcttaatttctca-tttacactttataatgtggtgaaatctttcaacttaccgg |
220 |
Q |
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| T |
37959168 |
gtgggcatacataataaattatgatcaaatttaaaaatatcaattaccttaatttctcattttactctttataaggtggtgaaatctttgaacttaccag |
37959069 |
T |
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| Q |
221 |
gtgaaacttggtggccatgtaacctaagcagtct-aatcccattgttgtgtcatctatatcttgaacctcagaatt |
295 |
Q |
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| T |
37959068 |
gtgaaacttggtggccatgcaaccttaggattctaaatcccattgctgtgtcgtctatatcttgaacctctgaatt |
37958993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 12650 - 12890
Alignment:
| Q |
46 |
tgaacaattcactttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattattaattgatagtatgcatgcatacataataaattat |
145 |
Q |
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| T |
12650 |
tgaacaacccactttatagttttagtgaagtactaattaat--caattattgatgacaacattaataattgatagtattcgcgcatacataataaattat |
12747 |
T |
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| Q |
146 |
gatcaaattgaaatatcaattttcttaatttctca-tttacactttataatgtggtgaaatctttcaacttaccgggtgaaacttggtggccatgtaacc |
244 |
Q |
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| T |
12748 |
tttcaaattgaaatatcaa---ccttaatttctcattttactctttataagttggtgaaatctaagaacttaccgggtgaaacttggtggccatgcaacc |
12844 |
T |
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| Q |
245 |
taagcagtct-aatcccattgttgtgtcatctatatcttgaacctc |
289 |
Q |
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| || | ||| |||||||||| ||| |||| ||||||||||||||| |
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| T |
12845 |
ttaggattctaaatcccattgctgtatcatttatatcttgaacctc |
12890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 1945 - 1813
Alignment:
| Q |
46 |
tgaacaattcactttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattattaattgatagtatgcatgcatacataataaattat |
145 |
Q |
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| T |
1945 |
tgaacaacccactttatagttttagtgaagtactaattaat--caattattgatgacaacattaataattgataatattcgcgcatacataataaattat |
1848 |
T |
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| Q |
146 |
gatcaaattgaaatatcaattttcttaatttctcattt |
183 |
Q |
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| T |
1847 |
tttcaaattgaaatatcaa---ccttaatttctcattt |
1813 |
T |
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