View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_high_9 (Length: 374)
Name: NF8995_high_9
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 358
Target Start/End: Original strand, 3266054 - 3266376
Alignment:
| Q |
25 |
gatcattacaagaattttaaaaggaccacgcaacaacaaatcaaactaaaaagccaatcctagactagctcttctctagactttgnnnnnnnggtaaaaa |
124 |
Q |
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| T |
3266054 |
gatcattacaaggattttaaatggaccacgcaacaacaaatcaaactaaa--gccaaacctagacaagctcttctctagactctgaaaaaa-ggtaaaaa |
3266150 |
T |
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| Q |
125 |
taccgatcagatcctaaggagactcaaactcacaccataaccatctaactacattgtaccaaacaagaaggaccactccacaagtgacaaatagataagt |
224 |
Q |
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| T |
3266151 |
taccgatcagatcttaaggagactcaaactctcaccataaccatctaactacattgtaccaaacaagaaggaccaccccacaagtgacaaatagataagt |
3266250 |
T |
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| Q |
225 |
tgaagaatcaaccacaaactcgcaaaaagcacaagagataccaacatgatccacaaacaacctacgtttaaactagttctagcaagtaggaatcttatcc |
324 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
3266251 |
tgaagaatcgaccacaaactcg-aaaaagcacaagagataccaacatgatccacaaacaacctacgttggccata-----ag--agtaggaatcttatca |
3266342 |
T |
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| Q |
325 |
tggaggagcttccagaagaaagatatcaccttaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3266343 |
tggaggagcttccagaagaaagatatcaccttaa |
3266376 |
T |
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