View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_low_11 (Length: 663)
Name: NF8995_low_11
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_11 |
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| [»] scaffold0907 (3 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 163 - 648
Target Start/End: Original strand, 2422 - 2905
Alignment:
| Q |
163 |
tcttagtacaacaaagtcagcatcttagtacatataaattcatagtgagtttgataaatcacattgacactataatcttattgaagcttcaaaatacagt |
262 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
2422 |
tcttagtacaacaaagtcaacatcttagtacatataaattcatagttagttcgataaatcacattgacactataatcgtgttgaagcttcaaaatacagt |
2521 |
T |
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| Q |
263 |
atttaacaaacttacgacacaacacaacttaattttatcaaattcatcgtcgatttaaacataatactacaacaaagttagcaacttcgcatatatttag |
362 |
Q |
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| T |
2522 |
atttaacaaacttacgacacaaca-aacctaattttatcaaattcatcgtcaatttaaacataatactacaacaaagttagcaacttcgcatatatttag |
2620 |
T |
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| Q |
363 |
accaacttcaaaatataatttttaccggactttggataacacaccgtgattctatcatactcatcgtcggtccagacatatacttaccaaataccaatta |
462 |
Q |
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| T |
2621 |
accgactttaaaatactatttttgccgaactttggacaacacaccatgattctatcatactcatcgtcggacca-acatatacttaccaaataccaatta |
2719 |
T |
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| Q |
463 |
catcacatagtcaaatactactagaacttatttatacaactagttaatatccacgcgatcatctagaacaagacctagaagtcacgtgagttacgattaa |
562 |
Q |
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| T |
2720 |
catcacatagtcaaatactactagaacttatttatacaactagttaatatccacgtgaccatctagaattagaactagaaatcacgttagttacgattaa |
2819 |
T |
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| Q |
563 |
ggtgaaacccagatgaaaaaccagacttaacagagaaaactccattccaaatctcagtaaaagctcttataataatcccatgatgt |
648 |
Q |
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| T |
2820 |
ggtgaaacccagatgaaaaaccagacttaacagagaaaactccattccaaatctcagtaaaagctcttataataatcccatgatgt |
2905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0907; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 2353 - 2425
Alignment:
| Q |
19 |
aaactgagattttgagaggagcgttcttcaatatctcaaatttacaccactaagtcaatccaactggattctt |
91 |
Q |
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| T |
2353 |
aaactaagattttgagaagagcgttcttcaatatctcaaacttatgccactaagtcaatccaactggattctt |
2425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0907; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 2482 - 2519
Alignment:
| Q |
122 |
acattgacactatgatcttgttgaagcttcaaaataca |
159 |
Q |
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| T |
2482 |
acattgacactataatcgtgttgaagcttcaaaataca |
2519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 647
Target Start/End: Original strand, 42945693 - 42945741
Alignment:
| Q |
599 |
aaactccattccaaatctcagtaaaagctcttataataatcccatgatg |
647 |
Q |
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| T |
42945693 |
aaactccattccaaatctcagtaaaagctctaacaataacaccatgatg |
42945741 |
T |
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