View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_low_17 (Length: 535)
Name: NF8995_low_17
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 27644744 - 27644969
Alignment:
| Q |
18 |
aatactcgattatcaagggaagttcagagctcgtaacattgtgaagaggaacagttgtaatttttccatcgctttcgtcgacgaaggattgaaccgttgc |
117 |
Q |
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| T |
27644744 |
aatactcgattatcaagggaagttcagagctcgtaacattgtgaagaggaacagttgtaatttttccatcgctttcgtcgacgaaggattgaaccgttgc |
27644843 |
T |
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| Q |
118 |
catctcctttgcaattgagggtttgactttgaaaacgacgttgtcggaggtgatgagtgagatcattgtttctgagagggagagtttgttcatctccgat |
217 |
Q |
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| T |
27644844 |
catctcctttgcaattgagggtttgactttgaaaacgacgttgtcggaggtgatgagtgagatcattgtttctgagatggtgagtttgttcatctccgat |
27644943 |
T |
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| Q |
218 |
gagatttgttgttctgccattgtttc |
243 |
Q |
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| T |
27644944 |
gaaacttgttgttccaccattgtttc |
27644969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 27549240 - 27549462
Alignment:
| Q |
18 |
aatactcgattatcaagggaagttcagagctcgtaacattgtgaagaggaacagttgtaatttttccatcgctttcgtcgacgaaggattgaaccgttgc |
117 |
Q |
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| T |
27549240 |
aatacttgatgatcaagggaagttcagagcttgaaacattgtggagaggaacggttgtgatttttccatcactttcgtcgacgaaggtttgaaccgttcc |
27549339 |
T |
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| Q |
118 |
catctcctttgcaattgagggtttgactttgaaaacgacgttgtcggaggtgatgagtgagatcattgtttctgagagggagagtttgttcatctccgat |
217 |
Q |
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| T |
27549340 |
catctcctttgcaattgagggtttgactttgaaaacgacgttgtcagaggttatgagtgagatcattgtttcggagagggatagtgtgttcatctctgat |
27549439 |
T |
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| Q |
218 |
gagatttgttgttctgccattgt |
240 |
Q |
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| T |
27549440 |
gaaacttgttgttctgccattgt |
27549462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 319 - 450
Target Start/End: Original strand, 27645040 - 27645166
Alignment:
| Q |
319 |
ggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacgggccacgcggtgtctcttctcttccttaacagagaagattttaaa |
418 |
Q |
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| T |
27645040 |
ggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacgggccacgcggtg-----tctcttccttaacagagaagattttaaa |
27645134 |
T |
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| Q |
419 |
cccctaaattgatgaacaaaattaggatgggt |
450 |
Q |
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| T |
27645135 |
cccctaaattgatgaacaaaattaggatgggt |
27645166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 27549588 - 27549634
Alignment:
| Q |
319 |
ggttaatgagattttggagtgaagaaggtttgtatttatagaccaaa |
365 |
Q |
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| T |
27549588 |
ggttaatgagattttggggtgaagaaggtttgtctttatagaccaaa |
27549634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 27549457 - 27549516
Alignment:
| Q |
181 |
cattgtttctgagagggagagtttgttcatctccgatgagatttgttgttctgccattgtttc |
243 |
Q |
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| T |
27549457 |
cattgtctctgagagggagagtgtgttcatctctgatgaaa---attgttctgccattgtttc |
27549516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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