View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8995_low_19 (Length: 440)
Name: NF8995_low_19
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_19 |
 | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 7606653 - 7606228
Alignment:
| Q |
1 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606653 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
7606554 |
T |
|
| Q |
101 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606553 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
7606454 |
T |
|
| Q |
201 |
atgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606453 |
atgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaaattaattgcttcacacacggatgagaagttgaagaatc |
7606354 |
T |
|
| Q |
301 |
actatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606353 |
actatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttta |
7606254 |
T |
|
| Q |
401 |
tggtaatgatttcggatggggaaaac |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7606253 |
tggtaatgatttcggatggggaaaac |
7606228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 7615667 - 7615244
Alignment:
| Q |
1 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| | ||||||||| |||||| |
|
|
| T |
7615667 |
tcaatgatgagattggtaccatcaaaatatcttctctacaagtgcttttaactcacctttggtgctctgtgatgcgttccataaaatttgacccacaaga |
7615568 |
T |
|
| Q |
101 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
200 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||| || ||| |
|
|
| T |
7615567 |
agaagtatttaatatagttgtgataggagttcgaccaaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaa |
7615468 |
T |
|
| Q |
201 |
atgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatc |
300 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
7615467 |
atgaaagttggggagttggtggaagaaggtggactttgtaaaggtgcttgtgagatgaacaagttaattgtttcacacactgatgagaagttgaagaatc |
7615368 |
T |
|
| Q |
301 |
actatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttta |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| | ||| |||| | || |||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
7615367 |
actacgagtcttggttaagaaatccaagctttgctaggtatcctaacatggcaaaaaataatttcatagccattagcagttctccgtggtttgatgttta |
7615268 |
T |
|
| Q |
401 |
tggtaatgatttcggatggggaaa |
424 |
Q |
| |
|
|||||||||||| || |||||||| |
|
|
| T |
7615267 |
tggtaatgattttggttggggaaa |
7615244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 7637484 - 7637058
Alignment:
| Q |
1 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
100 |
Q |
| |
|
|||| |||||| | || |||| ||||||| ||||||||||||| |||||||||||| ||||||||| ||| ||||| |||||||||||||| |||||| |
|
|
| T |
7637484 |
tcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacgtttggtgctatgtgacccgtttcaaacaatttgacccacaaga |
7637385 |
T |
|
| Q |
101 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
200 |
Q |
| |
|
|||||||| |||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||| || ||| |
|
|
| T |
7637384 |
agaagtatttaatagagtcgtgataggagttcgaccaaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaa |
7637285 |
T |
|
| Q |
201 |
atgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatc |
300 |
Q |
| |
|
||||||| ||| || |||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7637284 |
atgaaagctggggaattgttggaggaaggtggactttgtaaaggtgctttggagatgaacaagttaattgcttcacacactgatgagaagttgaagaatc |
7637185 |
T |
|
| Q |
301 |
actatgagtcttggttaagaaatccaagctttgttagggttgct---agcatgtccaataataatttcatatccattagtagttctccatggtttgatgt |
397 |
Q |
| |
|
| || ||||||||||||||||||||||||||| ||||| ||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637184 |
attacgagtcttggttaagaaatccaagcttttttaggcttgctaagaacatggtaaaaaataatttcatatccattagtagttctccatggtttgatgt |
7637085 |
T |
|
| Q |
398 |
ttatggtaatgatttcggatggggaaa |
424 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
7637084 |
ttatggtaatgattttggatggggaaa |
7637058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 7629032 - 7628708
Alignment:
| Q |
7 |
aagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagt |
106 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||||| ||||||| ||||||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
7629032 |
aagagattggtaacatcaaaatatcttctctacaagcgcttctaactcatgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagt |
7628933 |
T |
|
| Q |
107 |
atataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaa |
206 |
Q |
| |
|
|| |||| ||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||| |
|
|
| T |
7628932 |
atttaatagagtcgcgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaa |
7628833 |
T |
|
| Q |
207 |
gttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
306 |
Q |
| |
|
| || || |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
7628832 |
gctgaggaattgttggaggaaggtggactttgtaaaggtgcttgtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacg |
7628733 |
T |
|
| Q |
307 |
agtcttggttaagaaatccaagctt |
331 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
7628732 |
agtcttggttaaaaaatccaagctt |
7628708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 7655839 - 7656262
Alignment:
| Q |
1 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
100 |
Q |
| |
|
|||||| |||| ||| ||||| |||||| ||||||||||||||||||||||||| |||||||| || || | ||||||||||| |||| | |||||| |
|
|
| T |
7655839 |
tcaatgcagagattgataccaaaaaaatatcttctctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaaga |
7655938 |
T |
|
| Q |
101 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
200 |
Q |
| |
|
||| | |||| || | ||||||||| ||||||| ||||||||||||| || |||||||||||||||||| |||||||| |||| | ||| |
|
|
| T |
7655939 |
agatgcgcttaatacgttcataataggagttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaa |
7656038 |
T |
|
| Q |
201 |
atgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatc |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | ||||||||||| |||||| ||||||||||||| ||| || |||| || || |||||| |
|
|
| T |
7656039 |
atgaaagttggggagttgttggaggaaggtgggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatg |
7656138 |
T |
|
| Q |
301 |
actatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttta |
400 |
Q |
| |
|
| |||||||| ||||| |||||||||| |||| ||||| ||| |||| || || ||| ||||| | ||||||| ||||||||| |||||||||||| |
|
|
| T |
7656139 |
attatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagtttgatgttta |
7656238 |
T |
|
| Q |
401 |
tggtaatgatttcggatggggaaa |
424 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
7656239 |
tggtaatgattttggatggggaaa |
7656262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 7633556 - 7633443
Alignment:
| Q |
252 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagca |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7633556 |
gagatgaacaagttaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagca |
7633457 |
T |
|
| Q |
349 |
tgtccaataataat |
362 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
7633456 |
tgaccaataataat |
7633443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 8999310 - 8999255
Alignment:
| Q |
51 |
actcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagt |
106 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
8999310 |
actcacctttggcgctctgtgatccgttcaaaacaacttgacctacaagaagaagt |
8999255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
| Q |
374 |
tagtagttctccatggtttgatgtttatggtaatga |
409 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39097738 |
tagtagttctccaaggtttgatgtttatggtaatga |
39097703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
| Q |
375 |
agtagttctccatggtttgatgtttatggtaatgatttcggatgggg |
421 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39088060 |
agtagttctccaaggtttgatgtttatgataatgattttggttgggg |
39088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 7633760 - 7633664
Alignment:
| Q |
8 |
agaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaa |
104 |
Q |
| |
|
|||| |||||||| |||||||| || ||| | ||||||||| |||||||||||||| ||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
7633760 |
agagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgccatgtgacccgttccaaacaacttgacgcacaagaagaa |
7633664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 8935803 - 8936217
Alignment:
| Q |
1 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| | |||||||| || |||||| |||||| |
|
|
| T |
8935803 |
tcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaactcacctttggtgctgtgtgatgtgttccaaaaaaattgacccacaaga |
8935902 |
T |
|
| Q |
101 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
200 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||| || ||| |
|
|
| T |
8935903 |
agaagtggttaatagaatcgtgataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcagttataagttgtatggttaaa |
8936002 |
T |
|
| Q |
201 |
atgaaagttggtgagttgttggacgaaggtggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatc |
300 |
Q |
| |
|
|||| || ||| ||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
8936003 |
atgacagctggggagttgttgaaggaaggtggactttgtaaaggtgcttgtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatc |
8936102 |
T |
|
| Q |
301 |
actatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || |||| | || || ||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
8936103 |
actatgagtcttggttaagaaatccaagct---ttag------taacatgccaaaaaagaatttcatagccattagcagttctccgtggtttgatgttta |
8936193 |
T |
|
| Q |
401 |
tggtaatgatttcggatggggaaa |
424 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
8936194 |
tggtaatgattttggatggggaaa |
8936217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 136 - 306
Target Start/End: Original strand, 8938714 - 8938884
Alignment:
| Q |
136 |
caaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938714 |
caaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact |
8938813 |
T |
|
| Q |
236 |
atataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938814 |
atataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
8938884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 300 - 426
Target Start/End: Original strand, 8941738 - 8941864
Alignment:
| Q |
300 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8941738 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt |
8941837 |
T |
|
| Q |
400 |
atggtaatgatttcggatggggaaaac |
426 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8941838 |
atggtaatgatttcggatggggaaaac |
8941864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 230 - 410
Target Start/End: Original strand, 8913524 - 8913707
Alignment:
| Q |
230 |
tggactatataaaggtgcttgtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagc |
329 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
8913524 |
tggactttgtaaaggtgctttggagatgaacaagttaattgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagc |
8913623 |
T |
|
| Q |
330 |
tttgttagggttgct---agcatgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgat |
410 |
Q |
| |
|
||||||||| ||||| | |||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8913624 |
tttgttaggcttgctaagaacatggtaaaaactaatttcatatccattagtagttctccatagtttgatgtttatggtaatgat |
8913707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8910864 - 8911098
Alignment:
| Q |
1 |
tcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaaga |
100 |
Q |
| |
|
|||| |||||| | || |||| ||||||| ||||||||||||| |||||||||||| | |||| || ||| | ||| |||||||||||| | |||||| |
|
|
| T |
8910864 |
tcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacatctggtcctatgtgatatgtttcaaacaatttgatccacaaga |
8910963 |
T |
|
| Q |
101 |
agaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaa |
200 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||| |||||||||| || ||| |
|
|
| T |
8910964 |
tgaagtatttaatagagtcatgataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcaattgtaagttgtatggttaaa |
8911063 |
T |
|
| Q |
201 |
atgaaagttggtgagttgttggacgaaggtggact |
235 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
8911064 |
atgaaagttggggagctgttggaggaaggtggact |
8911098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 362
Target Start/End: Original strand, 8919071 - 8919184
Alignment:
| Q |
252 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagca |
348 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
8919071 |
gagatgaacaaattaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagca |
8919170 |
T |
|
| Q |
349 |
tgtccaataataat |
362 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
8919171 |
tgaccaataataat |
8919184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 40147079 - 40147241
Alignment:
| Q |
13 |
ttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataa |
112 |
Q |
| |
|
||||||||| ||||||| | || || ||| | ||||| || || |||||| ||||||| ||||||||||||||||||||| ||| |||||||| ||| | |
|
|
| T |
40147079 |
ttggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttatta |
40147178 |
T |
|
| Q |
113 |
tctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa |
175 |
Q |
| |
|
| | |||| |||||||| | || ||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
40147179 |
tatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaa |
40147241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 8102856 - 8102704
Alignment:
| Q |
23 |
caaaataacttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtg |
122 |
Q |
| |
|
||||||| |||| || ||||| ||||| | |||||||||||||| || |||||||| | ||||| |||| |||||| | | |||| | | |||| | |
|
|
| T |
8102856 |
caaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagacccacaagagaacgcatattttatggtcggg |
8102757 |
T |
|
| Q |
123 |
ataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa |
175 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
8102756 |
ataggagttagacaaaggtttgttccaccattgccggaagattattttggaaa |
8102704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 422
Target Start/End: Original strand, 40147453 - 40147488
Alignment:
| Q |
387 |
tggtttgatgtttatggtaatgatttcggatgggga |
422 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40147453 |
tggtttgatgtttatggtaatgattttggatgggga |
40147488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 260
Target Start/End: Complemental strand, 6500868 - 6500644
Alignment:
| Q |
37 |
tacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctac-aagaagaagtatataatctagtcgtgataggagttggac |
135 |
Q |
| |
|
||||||| |||||||||||| ||||| | ||||| ||| ||||||| || |||||| || |||||||||| || ||| | || | ||||| ||| ||| |
|
|
| T |
6500868 |
tacaagctcttttaactcacatttggcgttctgtgatccattccaaaaaacttgacccaccaagaagaagtttacaatatgttcctaataggcgttagac |
6500769 |
T |
|
| Q |
136 |
caaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact |
235 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||||||||||| | | ||| ||||| || | ||||||| ||||||||||||||| ||||| || | |
|
|
| T |
6500768 |
caaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttggaagaaggcgggat |
6500669 |
T |
|
| Q |
236 |
atataaaggtgcttgtgagatgaac |
260 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
6500668 |
tggtaaaggtgcttgggagatgaac |
6500644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 11969313 - 11969175
Alignment:
| Q |
37 |
tacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggacc |
136 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||| ||||| || || |||||||||| |||||||||||| || || | || || | || ||| || | |
|
|
| T |
11969313 |
tacaagcgcttttcactcacctctggcgctctgtggtccgctcaaatcaatttgacccacaagaagaagttcattatatggtagtaactggtgttagatc |
11969214 |
T |
|
| Q |
137 |
aaggtttgttccaccattaccagaagattattttggaaa |
175 |
Q |
| |
|
|| |||||| |||||||||| || |||||||||||||| |
|
|
| T |
11969213 |
gagatttgtttcaccattaccggaggattattttggaaa |
11969175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 6500539 - 6500491
Alignment:
| Q |
378 |
agttctccatggtttgatgtttatggtaatgatttcggatggggaaaac |
426 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
6500539 |
agttccccgtggtttgatatttatggtaatgattttggatgggggaaac |
6500491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 426
Target Start/End: Complemental strand, 4501 - 4454
Alignment:
| Q |
379 |
gttctccatggtttgatgtttatggtaatgatttcggatggggaaaac |
426 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4501 |
gttctccttggtttgatgtttatggtaatgattttggttggggaaaac |
4454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 15745016 - 15745068
Alignment:
| Q |
374 |
tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaac |
426 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
15745016 |
tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaac |
15745068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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