View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_low_23 (Length: 346)
Name: NF8995_low_23
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 21871247 - 21871560
Alignment:
| Q |
17 |
aaagtatatcataaaacatgttcaataacctggtgttcgaatgtaatactcggtgtttcttcagcacgcctattcatataattggcaagtgcagagaggg |
116 |
Q |
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| T |
21871247 |
aaagtatatcataaaacatgtttaataacctggtgtccaaatgtaatactcggtgtttcttcagcgcgcctattcatataattggcaagtgcagagaggg |
21871346 |
T |
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| Q |
117 |
ggaaaacaaatgcagccctcccaagcaatattaagaagattaagcaactgtaaattcccaacaagtttccaaatctgcgatgaagttgacaagaaaaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21871347 |
ggaaaacaaatgcagccctcccaagcaatattaagaagattaagcaactgtaaattcccagcaagtttccaaatctgcgatgaagttgacaagaaaaata |
21871446 |
T |
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| Q |
217 |
ttaaacgaaacaaagctatatattaccaaagtgatatgtcacgactcacaatgtatcccggaagttagttttaagaagatttccgaaatacatcatcaca |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21871447 |
ttaaacgaaacaaagctatataataccaaagtgatatgtcacgactcacaatgtatcccggaagttagttttaagaagatttccgaaatacatcatcaca |
21871546 |
T |
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| Q |
317 |
tcacatctaatatt |
330 |
Q |
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|||||||||||||| |
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| T |
21871547 |
tcacatctaatatt |
21871560 |
T |
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