View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8995_low_24 (Length: 341)

Name: NF8995_low_24
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8995_low_24
NF8995_low_24
[»] scaffold0003 (5 HSPs)
scaffold0003 (72-250)||(17455-17633)
scaffold0003 (72-250)||(31601-31779)
scaffold0003 (30-240)||(12248-12459)
scaffold0003 (249-329)||(15892-15972)
scaffold0003 (249-329)||(30038-30118)
[»] chr7 (8 HSPs)
chr7 (72-250)||(16428742-16428920)
chr7 (30-240)||(16423536-16423747)
chr7 (74-236)||(11513568-11513730)
chr7 (249-329)||(16427179-16427259)
chr7 (113-240)||(11506933-11507060)
chr7 (164-240)||(11566022-11566098)
chr7 (62-135)||(11565949-11566022)
chr7 (62-123)||(11506832-11506893)


Alignment Details
Target: scaffold0003 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 17633 - 17455
Alignment:
Q  72 attttcatttactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctcaaagaaaacatacaacacatttaatagtaatgagg 171  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  17633 attttcatgtactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctaaaagaaaacatacaacacatttaatagtgatgagg 17534  T
Q  172 aatgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtaggatttataaatcatatgcaataaat 250  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17533 aatgagaatgagaacgtgctcttaataaatttaatgtatttaaggtgagagtaggatttataaatcatatgcaataaat 17455  T

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Target: scaffold0003; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 31779 - 31601
Alignment:
Q  72 attttcatttactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctcaaagaaaacatacaacacatttaatagtaatgagg 171  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  31779 attttcatgtactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctaaaagaaaacatacaacacatttaatagtgatgagg 31680  T
Q  172 aatgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtaggatttataaatcatatgcaataaat 250  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31679 aatgagaatgagaacgtgctcttaataaatttaatgtatttaaggtgagagtaggatttataaatcatatgcaataaat 31601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 12459 - 12248
Alignment:
Q  30 atttgaccttgttactaagggtgatnnnnnnncaaacacaacattttcatttactcaagagaggtttaattataatgctttatatcaccactttactatt 129  Q
    ||||||||| |||||||||||||||        |||||||||| |||||| ||||||||||||||||||||||| || ||||||||||  ||||||||||    
T  12459 atttgacctcgttactaagggtgatagaaaaataaacacaacactttcatgtactcaagagaggtttaattatactgttttatatcactgctttactatt 12360  T
Q  130 tgtgctcaaagaaaacatacaacacatttaatagtaatgaggaatgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtagg-at 228  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||| || |||||||||||||| ||||  |    
T  12359 tgtgctaaatgaaaacatacaacacatttaatggtaatgaggaatgagaatgagaacatgctcttaagaaatttcatgtatttaaggtgagattaggctt 12260  T
Q  229 ttataaatcata 240  Q
    ||||||||||||    
T  12259 ttataaatcata 12248  T

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Target: scaffold0003; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 15972 - 15892
Alignment:
Q  249 atctcaagttttaggggactagatgtaattccatattcttgggtgaaccatgataaatattcgtcttgatcttttctctct 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15972 atctcaagttttaggggactagatgtaattccatattcttgggtgaaccatgataaatattcgtcttgatcttttctctct 15892  T

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Target: scaffold0003; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 30118 - 30038
Alignment:
Q  249 atctcaagttttaggggactagatgtaattccatattcttgggtgaaccatgataaatattcgtcttgatcttttctctct 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30118 atctcaagttttaggggactagatgtaattccatattcttgggtgaaccatgataaatattcgtcttgatcttttctctct 30038  T

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Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 16428920 - 16428742
Alignment:
Q  72 attttcatttactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctcaaagaaaacatacaacacatttaatagtaatgagg 171  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  16428920 attttcatgtactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctaaaagaaaacatacaacacatttaatagtgatgagg 16428821  T
Q  172 aatgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtaggatttataaatcatatgcaataaat 250  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16428820 aatgagaatgagaacgtgctcttaataaatttaatgtatttaaggtgagagtaggatttataaatcatatgcaataaat 16428742  T

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Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 16423747 - 16423536
Alignment:
Q  30 atttgaccttgttactaagggtgatnnnnnnncaaacacaacattttcatttactcaagagaggtttaattataatgctttatatcaccactttactatt 129  Q
    ||||||||| |||||||||||||||        |||||||||| |||||| ||||||||||||||||||||||| || ||||||||||  ||||||||||    
T  16423747 atttgacctcgttactaagggtgatagaaaaataaacacaacactttcatgtactcaagagaggtttaattatactgttttatatcactgctttactatt 16423648  T
Q  130 tgtgctcaaagaaaacatacaacacatttaatagtaatgaggaatgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtagg-at 228  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||| || |||||||||||||| ||||  |    
T  16423647 tgtgctaaatgaaaacatacaacacatttaatggtaatgaggaatgagaatgagaacatgctcttaagaaatttcatgtatttaaggtgagattaggctt 16423548  T
Q  229 ttataaatcata 240  Q
    ||||||||||||    
T  16423547 ttataaatcata 16423536  T

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Target: chr7; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 11513568 - 11513730
Alignment:
Q  74 tttcatttactcaagagaggtttaattataatgctttatatcaccactttactatttgtgctcaaagaaaacatacaacacatttaatagtaatgaggaa 173  Q
    |||||| |||||||||||||||||||||||||  ||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||| | ||||||||    
T  11513568 tttcatgtactcaagagaggtttaattataatattttatatcaccgctttacaatttgtgctaaaagaaaacttacaacacatttaataatgatgaggaa 11513667  T
Q  174 tgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtaggatttataaat 236  Q
    |||||||||||| || ||| |||  |||||||| ||||||||||| |||||||||||||||||    
T  11513668 tgagaatgagaacgttctcctaagcaatttaatgtatttaaggtgggagtaggatttataaat 11513730  T

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Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 16427259 - 16427179
Alignment:
Q  249 atctcaagttttaggggactagatgtaattccatattcttgggtgaaccatgataaatattcgtcttgatcttttctctct 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16427259 atctcaagttttaggggactagatgtaattccatattcttgggtgaaccatgataaatattcgtcttgatcttttctctct 16427179  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 11506933 - 11507060
Alignment:
Q  113 atcaccactttactatttgtgctcaaagaaaacatacaacacatttaatagtaatgaggaatgagaatgagaaagtgctcttaataaatttaatatattt 212  Q
    |||||| |||||| ||||||||| ||||||||| ||||||||||||||||   |||||||||||||||||||| || ||| |||  |||||||| |||||    
T  11506933 atcaccgctttacaatttgtgctaaaagaaaacttacaacacatttaataaggatgaggaatgagaatgagaacgttctcctaagcaatttaatgtattt 11507032  T
Q  213 aaggtgagagtaggatttataaatcata 240  Q
    |||||| ||||||| |||||||||||||    
T  11507033 aaggtgcgagtaggctttataaatcata 11507060  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 11566022 - 11566098
Alignment:
Q  164 taatgaggaatgagaatgagaaagtgctcttaataaatttaatatatttaaggtgagagtaggatttataaatcata 240  Q
    |||||| ||||||||||||||  |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  11566022 taatgatgaatgagaatgagatcgtgctcttaagaaatttaatgtatttaaggtgagagtaggttttataaatcata 11566098  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 11565949 - 11566022
Alignment:
Q  62 caaacacaacattttcatttactcaagagaggtttaattataatgctttatatcaccactttactatttgtgct 135  Q
    ||||||||| | ||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  11565949 caaacacaatacttttatgtactcaagagaggtttaattataatgttttatatcaccactttattatttgtgct 11566022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 11506832 - 11506893
Alignment:
Q  62 caaacacaacattttcatttactcaagagaggtttaattataatgctttatatcaccacttt 123  Q
    ||||||||| |  ||||| |||||||||||||||||||||||||  ||||||||||| ||||    
T  11506832 caaacacaaaacattcatgtactcaagagaggtttaattataatattttatatcaccgcttt 11506893  T

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