View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8995_low_28 (Length: 327)

Name: NF8995_low_28
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8995_low_28
NF8995_low_28
[»] chr5 (3 HSPs)
chr5 (19-327)||(35749983-35750291)
chr5 (289-323)||(7147088-7147122)
chr5 (294-327)||(34702487-34702520)
[»] chr1 (9 HSPs)
chr1 (293-327)||(34707895-34707929)
chr1 (291-321)||(3797849-3797879)
chr1 (291-325)||(39302939-39302973)
chr1 (291-327)||(9639848-9639884)
chr1 (291-327)||(18056747-18056783)
chr1 (291-327)||(38021245-38021281)
chr1 (291-327)||(38448897-38448933)
chr1 (291-327)||(47528478-47528514)
chr1 (291-327)||(52267758-52267794)
[»] chr6 (4 HSPs)
chr6 (291-327)||(9987075-9987111)
chr6 (290-323)||(34883733-34883766)
chr6 (291-327)||(8381225-8381261)
chr6 (291-327)||(24117520-24117556)
[»] chr3 (9 HSPs)
chr3 (291-327)||(17588356-17588392)
chr3 (290-327)||(21914102-21914139)
chr3 (290-327)||(40557629-40557666)
chr3 (291-324)||(40956755-40956788)
chr3 (291-327)||(8127457-8127493)
chr3 (291-327)||(14985523-14985559)
chr3 (291-327)||(22462306-22462342)
chr3 (289-317)||(41430856-41430884)
chr3 (291-327)||(51882231-51882267)
[»] scaffold0238 (1 HSPs)
scaffold0238 (292-327)||(25384-25419)
[»] chr4 (7 HSPs)
chr4 (288-327)||(18635521-18635560)
chr4 (288-327)||(53355020-53355059)
chr4 (291-321)||(17554569-17554599)
chr4 (291-327)||(14137044-14137080)
chr4 (291-323)||(26250644-26250676)
chr4 (291-323)||(29611420-29611452)
chr4 (291-327)||(31604324-31604360)
[»] chr7 (2 HSPs)
chr7 (297-327)||(34343112-34343142)
chr7 (295-327)||(20103485-20103517)
[»] chr8 (4 HSPs)
chr8 (294-327)||(19488297-19488330)
chr8 (291-327)||(2696526-2696562)
chr8 (291-327)||(19778059-19778095)
chr8 (291-327)||(38790639-38790675)
[»] chr2 (6 HSPs)
chr2 (290-327)||(19179081-19179118)
chr2 (290-327)||(41542831-41542868)
chr2 (291-327)||(7052767-7052803)
chr2 (291-327)||(11133069-11133105)
chr2 (291-327)||(18231504-18231540)
chr2 (291-327)||(35727431-35727467)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 35749983 - 35750291
Alignment:
Q  19 ttttcgacctttaaacttgcctcttcgcagaggttttaaattcctcttgtcgaatatgaataactgaatctgtcaagacttatcacatcctatcgaaagc 118  Q
    |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35749983 ttttcgacctttaaacttgcctcttcgcagagattttgaattcttcttgtcgaatatgaataactgaatctgtcaagacttatcacatcctgtcgaaagc 35750082  T
Q  119 aatccactcctaaattgatgctaagagtcaaactctaatttcatactaaaaagcttacctgtcaaacaaacaacattacaaacacatgctaatagttggc 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35750083 aatccactcctaaattgatgctaagagtcaaactctaatttcgtactaaaaagcttacctgtcaaacaaacaacattacaaacacaggctaatagttggc 35750182  T
Q  219 taatcacatgattatcctcactatcatctatttggatattcacttgaattattactaaggaaaccttgtgcagtccccgtgagcataactcagttggtaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35750183 taatcacatgattatcctcactatcatctatttggatattcacttgaattattactaaggaaaccttgtgcagtccccgtgagcataactcagttggtaa 35750282  T
Q  319 ggacaatgc 327  Q
    |||||||||    
T  35750283 ggacaatgc 35750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 7147122 - 7147088
Alignment:
Q  289 cagtccccgtgagcataactcagttggtaaggaca 323  Q
    ||||||||||||||||| |||||||||||||||||    
T  7147122 cagtccccgtgagcatagctcagttggtaaggaca 7147088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 34702487 - 34702520
Alignment:
Q  294 cccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||| ||||||||||||||||||||||||    
T  34702487 cccgtgagcttaactcagttggtaaggacaatgc 34702520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 34707929 - 34707895
Alignment:
Q  293 ccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||||||||||||||||||||||||||    
T  34707929 ccccgtgagcataactcagttggtaaggacaatgc 34707895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 3797849 - 3797879
Alignment:
Q  291 gtccccgtgagcataactcagttggtaagga 321  Q
    |||||||||||||||||||||||||||||||    
T  3797849 gtccccgtgagcataactcagttggtaagga 3797879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 39302939 - 39302973
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaat 325  Q
    ||||||||||||||| |||||||||||||||||||    
T  39302939 gtccccgtgagcatagctcagttggtaaggacaat 39302973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 9639884 - 9639848
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  9639884 gtccccgtgagcttaactcacttggtaaggacaatgc 9639848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 18056783 - 18056747
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  18056783 gtccccgtaagcttaactcagttggtaaggacaatgc 18056747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 38021245 - 38021281
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  38021245 gtccccgtgagcatagctcagttggcaaggacaatgc 38021281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 38448933 - 38448897
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| || |||||||||||||||||||||    
T  38448933 gtccccgtgagcttagctcagttggtaaggacaatgc 38448897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 47528514 - 47528478
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| || |||||||||||||||||||||    
T  47528514 gtccccgtgagcttagctcagttggtaaggacaatgc 47528478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 52267758 - 52267794
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  52267758 gtcctcgtgagcttaactcagttggtaaggacaatgc 52267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 9987075 - 9987111
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9987075 gtccccgtgagcttaactcagttggtaaggacaatgc 9987111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 34883733 - 34883766
Alignment:
Q  290 agtccccgtgagcataactcagttggtaaggaca 323  Q
    |||||||||||||||||||||||||||| |||||    
T  34883733 agtccccgtgagcataactcagttggtagggaca 34883766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 8381261 - 8381225
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  8381261 gtccccgtgagcttaactcagttggtaaagacaatgc 8381225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 24117556 - 24117520
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24117556 gtccccgtgagcttaactcagttgataaggacaatgc 24117520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 17588356 - 17588392
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17588356 gtccccgtgagcttaactcagttggtaaggacaatgc 17588392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 21914139 - 21914102
Alignment:
Q  290 agtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  21914139 agtccccatgagcttaactcagttggtaaggacaatgc 21914102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 40557666 - 40557629
Alignment:
Q  290 agtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  40557666 agtctccgtgagcataactcagttggcaaggacaatgc 40557629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 40956788 - 40956755
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaa 324  Q
    ||||||||||||||||||||||||||| ||||||    
T  40956788 gtccccgtgagcataactcagttggtagggacaa 40956755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 8127457 - 8127493
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  8127457 gtcctcgtgagcttaactcagttggtaaggacaatgc 8127493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 14985559 - 14985523
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||||||||||||||| || |||||||||    
T  14985559 gtccccgtgagcataactcagttgatagggacaatgc 14985523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 22462306 - 22462342
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  22462306 gtccccgtgagcttaactcagttgataaggacaatgc 22462342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 41430884 - 41430856
Alignment:
Q  289 cagtccccgtgagcataactcagttggta 317  Q
    |||||||||||||||||||||||||||||    
T  41430884 cagtccccgtgagcataactcagttggta 41430856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 51882267 - 51882231
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| |||||||||||||| |||||||||    
T  51882267 gtccccgtgagcttaactcagttggtatggacaatgc 51882231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 25384 - 25419
Alignment:
Q  292 tccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25384 tccccgtgagcttaactcagttggtaaggacaatgc 25419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 18635521 - 18635560
Alignment:
Q  288 gcagtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  18635521 gcagtccccgtgagcttaactcagttgataaggacaatgc 18635560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 53355059 - 53355020
Alignment:
Q  288 gcagtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  53355059 gcagtccccgtgagcatagctcagttggtagggacaatgc 53355020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 17554599 - 17554569
Alignment:
Q  291 gtccccgtgagcataactcagttggtaagga 321  Q
    |||||||||||||||||||||||||||||||    
T  17554599 gtccccgtgagcataactcagttggtaagga 17554569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 14137044 - 14137080
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  14137044 gtcctcgtgagcttaactcagttggtaaggacaatgc 14137080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 26250644 - 26250676
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggaca 323  Q
    ||||||||||||||||||||||||||| |||||    
T  26250644 gtccccgtgagcataactcagttggtagggaca 26250676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 29611452 - 29611420
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggaca 323  Q
    |||||||||||| ||||||||||||||||||||    
T  29611452 gtccccgtgagcttaactcagttggtaaggaca 29611420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 31604360 - 31604324
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| |||||||||||||||| |||||||    
T  31604360 gtccccgtgagcttaactcagttggtaagaacaatgc 31604324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 34343112 - 34343142
Alignment:
Q  297 gtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||||||||||||||||||||||    
T  34343112 gtgagcataactcagttggtaaggacaatgc 34343142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 20103517 - 20103485
Alignment:
Q  295 ccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||| ||||||||||||||||||||||||    
T  20103517 ccgtgagcttaactcagttggtaaggacaatgc 20103485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 19488297 - 19488330
Alignment:
Q  294 cccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| |||||||||||||||||||||    
T  19488297 cccgtgagcatagctcagttggtaaggacaatgc 19488330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 2696526 - 2696562
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||||||||||||||||| | |||||||||    
T  2696526 gtccccgtgagcataactcagttggcagggacaatgc 2696562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 19778059 - 19778095
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| || |||||||||||||||||||||    
T  19778059 gtccccgtgagcttagctcagttggtaaggacaatgc 19778095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 38790675 - 38790639
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||||||||||||||||| | |||||||||    
T  38790675 gtccccgtgagcataactcagttggcagggacaatgc 38790639  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 19179118 - 19179081
Alignment:
Q  290 agtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||||| || |||||||||||||||||||||    
T  19179118 agtccccgtgagcttagctcagttggtaaggacaatgc 19179081  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 41542868 - 41542831
Alignment:
Q  290 agtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  41542868 agtcctcgtgagcttaactcagttggtaaggacaatgc 41542831  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 7052767 - 7052803
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| || |||||||||||||||||||||    
T  7052767 gtccccgtgagcttagctcagttggtaaggacaatgc 7052803  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 11133069 - 11133105
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  11133069 gtccccgtgagcatagctcagttggtagggacaatgc 11133105  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 18231540 - 18231504
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| || |||||||||||||||||||||    
T  18231540 gtccccgtgagcttagctcagttggtaaggacaatgc 18231504  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 35727431 - 35727467
Alignment:
Q  291 gtccccgtgagcataactcagttggtaaggacaatgc 327  Q
    |||||||||||| |||||||||||||||| |||||||    
T  35727431 gtccccgtgagcttaactcagttggtaagaacaatgc 35727467  T

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