View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_low_35 (Length: 303)
Name: NF8995_low_35
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 35680878 - 35680586
Alignment:
| Q |
11 |
gaagcagagaggggcctggtggaacatatggaactcccaatgtgataactcctaacaccctttcagggtgtagaatggaaaacagatatgcaggaggacc |
110 |
Q |
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| T |
35680878 |
gaagcatagaggggcctggtggaacgtatggaactcccaatgtgataactcctaacaccctttcagggtgtagaatggaaaacagatatgcaggaggacc |
35680779 |
T |
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| Q |
111 |
tccaaaatcttttccaacaagaaaaacctaggatataaatgcataaaaaattaggcagcatattaagcatatatgctatgaagtatagcgacacattggc |
210 |
Q |
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| T |
35680778 |
tccaaaatcttttccaacaagaaaaacctaggatataaatgcataaaaaattaggcagcatattaagcatatatgctatgaagtatggcgacacattggc |
35680679 |
T |
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| Q |
211 |
tggaattgctacaaattattgatgaaaacagtcagggctaacaaatattaggactaaagaactaaagtaaaaattaatataccaaaacatgtt |
303 |
Q |
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| T |
35680678 |
tggaattgctacaaattattgatgaaaacagtcagggctaacaaatattaggactaaagaactaaagtaaaaattgatataccaaaacatgtt |
35680586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 35664864 - 35664742
Alignment:
| Q |
18 |
agaggggcctggtggaacatatggaactcccaatgtgataactcctaacaccctttcagggtgtagaatggaaaacagatatgcaggaggacctccaaaa |
117 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||| |||||||||| || |||||||| |
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| T |
35664864 |
agaggggcctggtggaacatgaggaactcccaaagtgataactcccaagaccctttctgggtgcagaatggaaaacaaatatgcaggacgagctccaaaa |
35664765 |
T |
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| Q |
118 |
tcttttccaacaagaaaaaccta |
140 |
Q |
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| T |
35664764 |
tcttttccaacaagaaacaccta |
35664742 |
T |
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