View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8995_low_38 (Length: 272)

Name: NF8995_low_38
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8995_low_38
NF8995_low_38
[»] chr4 (6 HSPs)
chr4 (10-259)||(7606839-7607088)
chr4 (10-259)||(7629224-7629473)
chr4 (10-259)||(7637670-7637919)
chr4 (10-259)||(7615835-7616084)
chr4 (86-236)||(7655483-7655633)
chr4 (81-223)||(39098306-39098448)
[»] chr7 (4 HSPs)
chr7 (10-252)||(8934427-8934669)
chr7 (102-259)||(8910525-8910682)
chr7 (10-259)||(8935368-8935617)
chr7 (10-239)||(8929972-8930201)
[»] chr6 (2 HSPs)
chr6 (162-258)||(6501114-6501207)
chr6 (195-223)||(11969547-11969575)
[»] chr3 (2 HSPs)
chr3 (81-258)||(8103080-8103257)
chr3 (87-238)||(40146733-40146884)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 7607088 - 7606839
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 109  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| | |||||||| || |||||||||| ||| ||||||||||||||||||||    
T  7607088 gtgttgctgacatcctggaaccggtctacgtacctctaattgtcgattcattttttgccttcatcggagataaaaactatgaaggcacgtcaaaaccatt 7606989  T
Q  110 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606988 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 7606889  T
Q  210 tcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606888 tcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 7606839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 7629473 - 7629224
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7629473 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 7629374  T
Q  110 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 209  Q
    ||||||||||||| |||||||||||||||||||| | || ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||    
T  7629373 gttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatttcatcaat 7629274  T
Q  210 tcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 259  Q
    |||||||||||||| |||||  ||||||||  | |||||||||| |||||    
T  7629273 tcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacc 7629224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 7637919 - 7637670
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataa-aagctacgaaggcacgtcaaaaccat 108  Q
    ||||||| ||||||||||||||   ||||||||||| |||||| |||| | ||||||| |||||  ||  ||| |||||| |||||||| ||||||||||    
T  7637919 gtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgc-tttatccgaagtaagaagctatgaaggcacatcaaaaccat 7637821  T
Q  109 tgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaa 208  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7637820 tgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaa 7637721  T
Q  209 ttcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 259  Q
    ||| ||||||||||| |||||  ||||||||  | |||||||||| |||||    
T  7637720 ttcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacc 7637670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 7616084 - 7615835
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 109  Q
    ||||||||||||||||||||||   ||| ||||||| |||||| |||||| | || || || |  || | | |||||||||||||||| |||||||| ||    
T  7616084 gtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgtt 7615985  T
Q  110 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 209  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  7615984 gttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaat 7615885  T
Q  210 tcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 259  Q
    ||||||||||||||||||||  ||||||||  | |||||||||| |||||    
T  7615884 tcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacc 7615835  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 7655483 - 7655633
Alignment:
Q  86 ctacgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacgga 185  Q
    |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || |||||||| |     ||||||||||| || | |||||||    
T  7655483 ctacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacgga 7655582  T
Q  186 aagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgt 236  Q
     |||||  |||||||||||||||||| ||||||||||| ||||| ||||||    
T  7655583 cagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt 7655633  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 39098448 - 39098306
Alignment:
Q  81 aaaagctacgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttg 180  Q
    |||| |||||||||||| |||||||||||| | || |||||| | || ||||| ||||| |||||||||||||| | |||  |||| |||||||| || |    
T  39098448 aaaaactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcg 39098349  T
Q  181 acggaaagtccgtgtggcatttcatcaattcatgggctgaaat 223  Q
    | || |||||  | ||||||||||||||||||||| |||||||    
T  39098348 atggtaagtcgttttggcatttcatcaattcatggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 8934427 - 8934669
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 109  Q
    ||||||||||||| ||||||||   ||||||||||| |||||| |||||| | ||||| || |  || | || ||||||||||||||| |||||||||||    
T  8934427 gtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccatt 8934526  T
Q  110 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 209  Q
    |||||| |||||| |||||||| || ||||||||||||||||||||||||| || ||||| | |||| ||||||||||||| ||||||||||||||||||    
T  8934527 gttggcagttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaat 8934626  T
Q  210 tcatgggctgaaatatcacgcggttgttgtggtgatcaaatat 252  Q
    |||||||||||||| |||||  ||||||||  | |||||||||    
T  8934627 tcatgggctgaaatctcacgtagttgttgtcatcatcaaatat 8934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 8910525 - 8910682
Alignment:
Q  102 aaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatt 201  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  202 tcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 259  Q
    |||| ||||| ||||||||||| |||||  ||||||||  | |||||||||| |||||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacc 8910682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 8935368 - 8935617
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 109  Q
    ||||||||||||| ||||||||   ||||||||| | |||||| |||||| | ||||| || |  |  | || ||||||||||||||| |||||||||||    
T  8935368 gtgttgctgacattctagaacccacctacgtaccaccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccatt 8935467  T
Q  110 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 209  Q
    |||||| |||||| |||| ||| || ||||||||||||||||||||||||| || ||||| | |||| ||||||||||||| ||||||||||||||||||    
T  8935468 gttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaat 8935567  T
Q  210 tcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacc 259  Q
    || ||||||||||| |||||  ||||||||  | |||||||||| |||||    
T  8935568 tcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacc 8935617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 8929972 - 8930201
Alignment:
Q  10 gtgttgctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccatt 109  Q
    ||||||||||||| ||||||||   ||||||||||| |||||| |||||| | ||||| || |  || | || ||||||||||| ||| |||||||||||    
T  8929972 gtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatcaaaaccatt 8930071  T
Q  110 gttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaat 209  Q
    ||||||  ||||| |||| ||| || ||||||||||||||||||||||||| || ||||| | |||| |||| |||||||| ||||| ||||||||||||    
T  8930072 gttggcatttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtgacatttcatcaat 8930171  T
Q  210 tcatgggctgaaatatcacgcggttgttgt 239  Q
    |||||||||||||| |||||  ||||||||    
T  8930172 tcatgggctgaaatctcacgtagttgttgt 8930201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 6501207 - 6501114
Alignment:
Q  162 ttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaac 258  Q
    ||||||||||| |||  ||  ||||||||| |||||||||| |||| ||| ||||||||||| ||||| |||||||   || |||||||||||||||    
T  6501207 ttcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgtt---gtaatcaaatatccaaac 6501114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  195 tggcatttcatcaattcatgggctgaaat 223  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 8103257 - 8103080
Alignment:
Q  81 aaaagctacgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttg 180  Q
    |||| |||||||||||| ||| |||||||||| || || ||| | || ||| |||||||||| || || |||||||   | || |||||||| || ||||    
T  8103257 aaaaactacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttg 8103158  T
Q  181 acggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaac 258  Q
    | ||||  || |  ||| ||||||| ||||| ||||||||||| ||||| ||| ||||| |  |||||| ||||||||    
T  8103157 atggaacttcggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaac 8103080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 40146733 - 40146884
Alignment:
Q  87 tacgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaa 186  Q
    ||||||||||| ||| |||||||||| ||||| ||| | || ||| ||||||||||  | ||||||||||   | || |||||||  || |||||||||     
T  40146733 tacgaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggag 40146832  T
Q  187 agtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttg 238  Q
    |||||   |||| |||||| |||||||||||  |||| || || ||||||||    
T  40146833 agtccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttg 40146884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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