View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_low_43 (Length: 258)
Name: NF8995_low_43
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 33734732 - 33734962
Alignment:
| Q |
17 |
agaaattatctaaaatcaagagacatcatgcagtttactaaacatcttcaaggtcactgattatgtctgattgttatgtaaaactatcaataagcacatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33734732 |
agaaattatctaaaatcaagagacatcatgcagtttactaaacatcttcaaggtcactgattatgtctgattgttatgtaaaactatcaataagcacatg |
33734831 |
T |
|
| Q |
117 |
cttggcacctatgatgcacaacgattttatcctctcctaatggaaacaaacaaaatagtgaatacaaccatattttagttcgctttattttcttcttcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33734832 |
tttggcacctatgatgcacaacgattttatcctctcctaatggaaacaaacaaaatattgaatacaaccatattttagttcactttattttcttcttcat |
33734931 |
T |
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| Q |
217 |
tcacttcatattcatcatcatctccgtctgt |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33734932 |
tcacttcatattcatcatcatctccgtctgt |
33734962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 16213353 - 16213570
Alignment:
| Q |
17 |
agaaattatctaaaatcaagagacatcatgcagtttactaaacatcttcaaggtcactgattatgtctgattgttatgtaaaactatcaataagcacatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16213353 |
agaaattatctaaaatcaagagacatcatgcagtttactaaacatcttcaaggtcactgattatgtctgattgttatgtaaaactatcaataagcacatg |
16213452 |
T |
|
| Q |
117 |
cttggcacctatgatgcacaacgattttatcctctcctaatggaaacaaacaaaatagtgaatacaaccatattttagttcgctttattttcttcttcat |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
16213453 |
cttggcacctatgatgcacgacgattttatcctctcctaatggaaacaaac-------------taaccatattttagttcactttattttcttcttcat |
16213539 |
T |
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| Q |
217 |
tcacttcatattcatcatcatctccgtctgt |
247 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
16213540 |
tcacttgatattcatcatcatctccgtctgt |
16213570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 41711795 - 41711637
Alignment:
| Q |
29 |
aaatcaagagacatcatgcagtttactaa---acatcttcaaggtcactgattatgtctgattgttatgtaaaa-----ctatcaataagcacatgcttg |
120 |
Q |
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||||||||||||| ||||||||||||||| ||||||| |||| ||| || |||||||||||| ||||| | ||||||||||||| ||| ||| |
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| T |
41711795 |
aaatcaagagacaacatgcagtttactaatcaacatcttgaaggccaccaatcatgtctgattgtcatgtagcatagtactatcaataagcatatgtttg |
41711696 |
T |
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| Q |
121 |
gcacctatgat------gcacaacgattttatcctctcctaatggaaacaaacaaaata |
173 |
Q |
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||||||| || ||| || | ||||||||||||||||||||||||||||||||| |
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| T |
41711695 |
gcacctacgaatacaacgcagaatggttttatcctctcctaatggaaacaaacaaaata |
41711637 |
T |
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