View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8995_low_45 (Length: 241)
Name: NF8995_low_45
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 5257253 - 5257042
Alignment:
| Q |
12 |
gtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5257253 |
gtgtttccattaatcattttgtcttggatgtcaacaggaactaatgatctcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctt |
5257154 |
T |
|
| Q |
112 |
tagatgtaccgagtaatagaatacatgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgcatttctgaagatcaact |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5257153 |
tagatgtaccgagtaatagaatacatgaactttcatctttttcgaaccaacttccaaggcttaaaagtctttgggtggattgcatttctgaagatcaact |
5257054 |
T |
|
| Q |
212 |
ttctattgattc |
223 |
Q |
| |
|
|||||||||||| |
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|
| T |
5257053 |
ttctattgattc |
5257042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 5284308 - 5284100
Alignment:
| Q |
12 |
gtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctt |
111 |
Q |
| |
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|||||||||||||| |||||||| ||||||||| || || ||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
5284308 |
gtgtttccattaataattttgtcatggatgtcagca---acaaataatctcccatttccatttcaaatttcttcttctgaaatgtcatctcttgtttctt |
5284212 |
T |
|
| Q |
112 |
tagatgtaccgagtaatagaatacatgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgcatttctgaagatcaact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||| |||||||||||||||||||| || ||||||||||| |
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| T |
5284211 |
tagatgtaccgagtaatagaatacatgaactttcatcttttttgtaccgacttccatggcttcaaagtctttgggtggattgcaactccgaagatcaact |
5284112 |
T |
|
| Q |
212 |
ttctattgattc |
223 |
Q |
| |
|
|||| ||||||| |
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|
| T |
5284111 |
ttctcttgattc |
5284100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 5397157 - 5397315
Alignment:
| Q |
60 |
ctcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatctttttcgaacc |
159 |
Q |
| |
|
||||||||||||||||||| ||||| ||| | ||||||||||| |||||||| | ||| | |||| ||| || ||||| |||||||||||||| | |
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| T |
5397157 |
ctcccatttccatttcaaa---catctgctgccatgtcatctcttatttctttacacgtaacaagtagtagttcgcacgaactatcatctttttcgaaac |
5397253 |
T |
|
| Q |
160 |
aacttccaaggcttacaagtctttgggtggattgcatttctgaagatcaactttctattgat |
221 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| |
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|
| T |
5397254 |
aacttccaaggcttcgaagtctttgcgtggattgcaattctgaagatcaactttctcttgat |
5397315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 5354533 - 5354336
Alignment:
| Q |
12 |
gtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctt |
111 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || || ||| |||||| || ||||||||||| ||||| ||| | |||||||||||||||||| |
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|
| T |
5354533 |
gtgtttccatctatcatttggtcttggatgtcacca---acaaataatctccgatctccatttcaaa---catctgctgccatgtcatctcttgtttctt |
5354440 |
T |
|
| Q |
112 |
tagatgtaccgagtaatagaatacatgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgcatttctgaagatcaact |
211 |
Q |
| |
|
| ||||||||||| | ||| | |||| | ||||||||||| |||| |||||||| ||| ||||||| |||||||||||| ||| | ||||||||| |
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| T |
5354439 |
ttgatgtaccgagcagtagtttcaatgagttatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaact |
5354340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 5157547 - 5157444
Alignment:
| Q |
12 |
gtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctt |
111 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || || ||| ||||||||| ||||||||||| ||||| ||| | |||||||||||||| ||| |
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| T |
5157547 |
gtgtttccatctatcatttggtcttggatgtcacca---acaaataatctcccatctccatttcaaa---catctgctgccatgtcatctcttgttcctt |
5157454 |
T |
|
| Q |
112 |
tagatgtacc |
121 |
Q |
| |
|
|||||||||| |
|
|
| T |
5157453 |
tagatgtacc |
5157444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 47986703 - 47986643
Alignment:
| Q |
135 |
catgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgca |
195 |
Q |
| |
|
|||||||| || || ||||| ||||| |||| ||||||| |||||||||||||||||||| |
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|
| T |
47986703 |
catgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgca |
47986643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 47995990 - 47995930
Alignment:
| Q |
135 |
catgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgca |
195 |
Q |
| |
|
|||||||| || || ||||| ||||| |||| ||||||| |||||||||||||||||||| |
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|
| T |
47995990 |
catgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgca |
47995930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 48005277 - 48005217
Alignment:
| Q |
135 |
catgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgca |
195 |
Q |
| |
|
|||||||| || || ||||| ||||| |||| ||||||| |||||||||||||||||||| |
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|
| T |
48005277 |
catgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgca |
48005217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 48014562 - 48014502
Alignment:
| Q |
135 |
catgaactttcatctttttcgaaccaacttccaaggcttacaagtctttgggtggattgca |
195 |
Q |
| |
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|||||||| || || ||||| ||||| |||| ||||||| |||||||||||||||||||| |
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|
| T |
48014562 |
catgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgca |
48014502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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