View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8995_low_46 (Length: 235)
Name: NF8995_low_46
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 42684227 - 42684422
Alignment:
| Q |
16 |
gtgttgtattgtagcagagttttaataaactgctaatgttttgtgatgcacaatttagtataatgtattgccaaatagtggctataccatttcttcacac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42684227 |
gtgttgtattgtagcagagttttaataaactgctaatgttttgtgatgcacaatttagtataatgtattgccaaatagtggctataccatttcttcacac |
42684326 |
T |
|
| Q |
116 |
cgctataacattgcagtgtagcggaatttgaaaataaaaaagaatactatttttcgcgatgcacgactgacaacactgaaattgtgatatacctac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42684327 |
cgctataacattgcagtgtagcggaatttgaaaataaaaaagaatactatttttcgcgatgcacgactgacaacactgaaattgtgatatacctac |
42684422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University