View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8995_low_8 (Length: 692)
Name: NF8995_low_8
Description: NF8995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8995_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 20 - 679
Target Start/End: Original strand, 5819949 - 5820622
Alignment:
| Q |
20 |
agtcaaccactaggttttgaggtaaaaggaaaataaattgtgtttacaagttgagaaaatcactctatatcctgaaatagacatctagatcttggaataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819949 |
agtcaaccactaggttttgaggtaaaaggaaaataaattgtgtttacaagttgagaaaatcactctatatcctgaaatagacatctagatcttggaataa |
5820048 |
T |
|
| Q |
120 |
gaaaataaatgggttccttcttaaaaaaggttatgttaaatgtgtaaatgagcaaggcatgaacactacaaataaacgcaaatttattgtgtgcttataa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820049 |
gaaaataaatgggttccttcttaaaaaaggttatgttaaatgtgtaaatgagcaaggcatgaacactacaaataaacgcaaatttattgtgtgcttataa |
5820148 |
T |
|
| Q |
220 |
ataaataatatgattatgactataaataatgaagtagagatgaattgcttcaaatgaaacacgatgaaccatattgagatgtttgatttaggaaatagaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820149 |
gtaaataatatgattatgactataaataatgaagtagagatgaattgcttcaaatgaaacacgatgaaccatattgagatgtttgatttaggaaatagaa |
5820248 |
T |
|
| Q |
320 |
tttgagatgaagtcatagggtttttggtgatttttcaaaataaatatgtacaagatatatttaaaaggcccact-----atgaaaaattgcaagccagtt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
5820249 |
tttgagatgaagtcatagggtttttggtgatttttcaaaataaatatgtacaagatatattgaaaaggcccactatgaaatgaaaaattgcaagccagtt |
5820348 |
T |
|
| Q |
415 |
tcaactttagtggacacaagaatcaaacttgttttgagcaatgatgaaaaagaagtggattcaacacattacaagcagatagtgggatcaaccaacaaaa |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
5820349 |
tcaactttagtggacacaagaatcaaacttgttttgagcaatgatgaaaaagaagtggattcaacacattagaagcaaatagtgggatcaactaacaaaa |
5820448 |
T |
|
| Q |
515 |
ataatctctcaatctaaacaaacactcacatttcactaatgttgagattttatacttccacaacttgtttctctttatttgaacattctctttcacatct |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5820449 |
ataatctctcaatctaaacaaacactcacatttcactaatgttgagattttatacttccacaacttgtttctctttatatgaacattctctttcacatct |
5820548 |
T |
|
| Q |
615 |
caacccaacaaattattttatggcattcctcat---------ttttgaaataacaatggcaaaccctaacttct |
679 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
5820549 |
caacccaacaaattattttatggcattcctcatattatctgattttgaaataacaatgtcaaaccctaacttct |
5820622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 32251837 - 32251891
Alignment:
| Q |
512 |
aaaataatctctcaatctaaacaaacactcacatttcactaatgttgagatttta |
566 |
Q |
| |
|
||||||| |||||||||||||| || || |||||||||| |||||||||||||| |
|
|
| T |
32251837 |
aaaataacctctcaatctaaacgaaaacccacatttcacggatgttgagatttta |
32251891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 29997240 - 29997319
Alignment:
| Q |
94 |
aaatagacatctagatcttggaataagaaaataaatgggttccttcttaaaaaaggttatgttaaatgtgtaaatgagca |
173 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||| |||||||||||||| || |||| | ||| ||||||||||||||||| |
|
|
| T |
29997240 |
aaatagacagctagagcttggaacaagaaaatagatgggttccttcttcaacaaggatttgtgaaatgtgtaaatgagca |
29997319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 580
Target Start/End: Complemental strand, 35011162 - 35011094
Alignment:
| Q |
512 |
aaaataatctctcaatctaaacaaacactcacatttcactaatgttgagattttatacttccacaactt |
580 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||||||| | || |||||||| | ||| ||||||| |
|
|
| T |
35011162 |
aaaataacctcttaatctaaacaaacactcgcatttcactactattaagattttacatttcgacaactt |
35011094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University