View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8996_low_1 (Length: 355)
Name: NF8996_low_1
Description: NF8996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8996_low_1 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 29911665 - 29912002
Alignment:
| Q |
19 |
ctagaaatcttccaactgacccctttcttgacattgtttccttcattttttcacaccctcatgatgggg-ttttagcccttattgattcttcatctgggt |
117 |
Q |
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| T |
29911665 |
ctagaaatcttccaactgacccttttcttgacattgtttccttcattttttcacactctcatgatgggggttttagcccttattgattcttcatctgggt |
29911764 |
T |
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| Q |
118 |
cttccatttcttactcaaagttgttacctttagtcaaatccatggcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctact |
217 |
Q |
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| T |
29911765 |
cttccatttcttactcaaagttgttacctttagtcaaatccatggcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctact |
29911864 |
T |
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| Q |
218 |
tccaaattcaatttattaccctgttatactattggctgttctgtatttaggtgctgtttttacaccattgaatcctcttagtagtgttggcgaaattcgt |
317 |
Q |
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| T |
29911865 |
tccaaattcaatttattaccctgttatactattggctgttctgtatttaggtgctgtttttacaccattgaatcctcttagtagtgttggcgaaattcgt |
29911964 |
T |
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| Q |
318 |
aaacaggttcaagagtgtggtgtgagttttgcttttac |
355 |
Q |
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| T |
29911965 |
aaacaggttcaagagtgtggtgtgagttttgcttttac |
29912002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 355
Target Start/End: Complemental strand, 11453144 - 11452816
Alignment:
| Q |
27 |
cttccaactgacccctttcttgacattgtttccttcattttttcacaccctcatgatggggttttagcccttattgattcttcatctgggtcttccattt |
126 |
Q |
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| T |
11453144 |
cttccaacagacccttttctcgatgttgtttccttcattttttctcaccctcatgacggggttttagcccttattgattcctcatctgggacttccattt |
11453045 |
T |
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| Q |
127 |
cttactcaaagttgttacctttagtcaaatccatggcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctacttccaaattc |
226 |
Q |
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| T |
11453044 |
cttactcaaatttgttaactttagtcaaatccttggcttctggtcttcataaaatgggtgtttcacaaggtgatgttgttttgcttttacttccaaattc |
11452945 |
T |
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| Q |
227 |
aatttattaccctgttatactattggctgttctgtatttaggtgctgtttttacaccattgaatcctcttagtagtgttggcgaaattcgtaaacaggtt |
326 |
Q |
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| T |
11452944 |
aatttactatcctattgtactattgagtgttatgtatctaggtgctgttgttacaccattgaatccttttagtagtgttggcgaaattcgtaagcaggtt |
11452845 |
T |
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| Q |
327 |
caagagtgtggtgtgagttttgcttttac |
355 |
Q |
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| T |
11452844 |
aaggagtgtcgtgtgagcttttcttttac |
11452816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 355
Target Start/End: Complemental strand, 11442571 - 11442243
Alignment:
| Q |
27 |
cttccaactgacccctttcttgacattgtttccttcattttttcacaccctcatgatggggttttagcccttattgattcttcatctgggtcttccattt |
126 |
Q |
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||||| || ||||| ||||| ||| |||| | |||||||||||| || |||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
11442571 |
cttccgaccgacccttttctcgacgttgtatgcttcattttttctcatcctcatgacggggttttagcccttattgattccttatctgggacttccattt |
11442472 |
T |
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| Q |
127 |
cttactcaaagttgttacctttagtcaaatccatggcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctacttccaaattc |
226 |
Q |
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| T |
11442471 |
cttactcaaatttgttaactttagtcaaatccttggcttctggtcttcataaaatgggtgtttcacaaggtgatgttgttttgcttttacttcccaattc |
11442372 |
T |
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| Q |
227 |
aatttattaccctgttatactattggctgttctgtatttaggtgctgtttttacaccattgaatcctcttagtagtgttggcgaaattcgtaaacaggtt |
326 |
Q |
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| T |
11442371 |
aatttactatcctattgcattattgagtgttatgtatctaggtgctgttgttacaccattgaatcctcttagtagtgttgatgaaattcgtaagcgggtt |
11442272 |
T |
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| Q |
327 |
caagagtgtggtgtgagttttgcttttac |
355 |
Q |
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| T |
11442271 |
aatgactgtggtgtgagttttgcttttac |
11442243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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